Motif HL_74322.2 Version HL_74322.2 of this group appears in releases 3.87 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_025 | 4V9F | 0.0775 | 2 | 0 | LSU rRNA | U | 872 | G | 873 | A | 875 | A | 876 | G | 878 | cWW | tSW |
| 2 | HL_8VTW_023 | 8VTW | 0.0404 | 2 | 1A | LSU rRNA | U | 779 | G | 780 | A | 782 | A | 783 | G | 785 | cWW | tSW |
| 3 | HL_5J7L_156 | 5J7L | 0.0000 | 2 | DA | LSU rRNA | U | 779 | G | 780 | A | 782 | A | 783 | G | 785 | cWW | tSW |
| 4 | HL_4WF9_024 | 4WF9 | 0.1916 | 2 | X | LSU rRNA | A | 824 | G | 825 | A | 827 | A | 828 | U | 830 | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAGG | 2 |
| UGAAAAG | 1 |
| AGAAAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAG | 2 |
| GAAAA | 1 |
| GAAAU | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-tSW-F
- Heat map statistics
- Min 0.04 | Avg 0.10 | Max 0.23
Coloring options: