Motif HL_75091.1 Version HL_75091.1 of this group appears in releases 3.2 to 3.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_134 | 5J7L | 0.6161 | 1 | DA | LSU rRNA | U | 59 | G | 60 | U | 62 | A | 63 | A | 64 | U | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH | |
| 2 | HL_5X2G_002 | 5X2G | 0.0000 | 2 | B | sgRNA | G | 54 | U | 55 | U | 57 | G | 58 | C | 59 | G | 60 | G | 61 | G | 62 | C | 64 | cWW | ncSH | |
| 3 | HL_2JLT_001 | 2JLT | 0.7690 | 1 | A | R06 | G | 5 | G | 6 | C | 8 | C | 9 | C | 10 | A | 11 | G | 12 | A | 13 | C | 14 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCUAAUCUG | 1 |
| GUUUGCGGGAC | 1 |
| GGUCCCAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCUAAUCU | 1 |
| UUUGCGGGA | 1 |
| GUCCCAGA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R-cSH-R
- Heat map statistics
- Min 0.62 | Avg 0.48 | Max 0.77
Coloring options: