Motif HL_77232.3 Version HL_77232.3 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_8H0S_002 | 8H0S | 0.1857 | 2 | Y | RNA (17-mer) | A | 31 | C | 32 | U | 35 | G | 36 | A | 37 | C | 38 | U | 39 | cWW | ncWB | |
2 | HL_8H1B_001 | 8H1B | 0.0000 | 2 | C | RNA (17-mer) | A | 31 | C | 32 | U | 35 | G | 36 | A | 37 | C | 38 | U | 39 | cWW | ncWB | |
3 | HL_6JXM_002 | 6JXM | 0.2092 | 1 | B | tRNA | G | 41 | C | 42 | A | 44 | A | 45 | A | 46 | A | 47 | C | 48 | cWW | ||
4 | HL_1N78_002 | 1N78 | 0.2437 | 2 | tRNA anticodon loop | C | tRNA(Glu) | C | 531 | C | 532 | U | 535 | C | 536 | A | 537 | A | 538 | G | 539 | cWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
ACUUUGACU | 2 |
GCUAAAAC | 1 |
CCUCUCAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CUUUGAC | 2 |
CUAAAA | 1 |
CUCUCAA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- tRNA anticodon loop (1)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.19 | Avg 0.17 | Max 0.28
Coloring options: