#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 71-72-63-5
1 HL_6GSK_2046GSK0.67532T-loop1K tRNAG535MU54PSU55G57A58U60C61ncWWntWH
2 HL_1QTQ_0021QTQ0.54802tRNA anticodon loopB tRNAA931U932U933U935A937U938U939cWWtSH
3 HL_4JXZ_0024JXZ0.55602tRNA anticodon loopBRNA (71-MER)U931U932U933U935A937U938A939cWWntSH
4 HL_4JYZ_0024JYZ0.56372tRNA anticodon loopB tRNAU931OMU932U933U9352MA937PSU938A939cWWntSH
5 HL_2D6F_0052D6F0.62382tRNA anticodon loopFtRNAG931C932U933G936G937A938C939cWWcWW
6 HL_3IVK_0053IVK0.52941T-loop relatedMclass I ligase productG92U93U94A95A96A98C99cWWntSH
7 HL_6CZR_0966CZR0.21471T-loop related1a SSU rRNAG1072U1073U1074A1075A1076U1078C1079cWWcwW
8 HL_5J7L_0245J7L0.18181T-loop relatedAA SSU rRNAG1089U1090U1091A1092A1093U1095C1096cWWcwW
9 HL_4LFB_0254LFB0.16101T-loop relatedA SSU rRNAG1089U1090U1091A1092A1093U1095C1096cWWcwW
10 HL_8P9A_2188P9A0.13661T-loop relatedsR SSU rRNAC1309U1310U1311A1312A1313U1315G1316cWWcwW
11 HL_8C3A_2208C3A0.00001T-loop relatedCM SSU rRNAC1294U1295U1296A1297A1298U1300G1301cWWcwW
12 HL_8P9A_1368P9A0.16561T-loop relatedAR LSU rRNAC1076U1077U1078A1079A1080U1082G1083cWWcwW
13 HL_3R4F_0013R4F0.23451T-loop relatedApRNAA24U25U26G27A28U30U31cWWcwW
14 HL_8P9A_1208P9A0.19683T-loop relatedAR LSU rRNAU278U279U280G281G282U286G287cWWcwW
15 HL_7TZS_0027TZS0.44901T-loop relatedXTPP riboswitch (THI element)G66A67U68A69A70U71C73cWW
16 HL_3K0J_0023K0J0.44351T-loop relatedERNA (87-MER)G66A67U68A69A70U71C73cWW
17 HL_3D2V_0023D2V0.45221T-loop relatedATPP riboswitch (THI element)G54G55U56A57A58U59C61cWW
18 HL_4V9F_0394V9F0.49180Other HL0 LSU rRNAC1594G1595U1596A1597A1598U1599G1600cWW
19 HL_8P9A_1958P9A0.48041T-loop with 1 bulged basesR SSU rRNAG243A244U245G246A247U248C250cWW
20 HL_8C3A_1978C3A0.45961T-loop with 1 bulged baseCM SSU rRNAG241A242U243G244A245U246C248cWW
21 HL_5CCB_0035CCB0.68652T-loop relatedN tRNAG53U54U55C56A58||AG59C61cWW
22 HL_4WF9_0194WF90.57372Other HLX LSU rRNAC654A655G656U657A659U661G662cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUUAAGUC3
CUUAAUUG3
GAUAAUGC2
GAUGAUUC2
G(5MU)(PSU)CGACUC1
AUUCUGAUU1
UUUUUGAUA1
UUUGA1
GCUUUGGAC1
GUUAAAAC1
AUUGAGUU1
UUUGGGAAUG1
GGUAAUGC1
CGUAAUG1
GUUCAAGUC1
CAGUAAAUG1
Non-Watson-Crick part of the motif
SequenceCounts
UUAAGU3
UUAAUU3
AUAAUG2
AUGAUU2
(5MU)(PSU)CGACU1
UUCUGAU1
UUUUGAU1
(OMU)U(1RN)UG(2MA)(PSU)1
CUUUGGA1
UUAAAA1
UUGAGU1
UUGGGAAU1
GUAAUG1
GUAAU1
UUCAAGU1
AGUAAAU1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusUpdated, 2 parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • T-loop related (13)
  • tRNA anticodon loop (4)
  • Other HL (2)
  • T-loop with 1 bulged base (2)
  • T-loop (1)
  • Basepair signature
    cWW-F-F-F-F-F
    Heat map statistics
    Min 0.08 | Avg 0.52 | Max 0.94
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