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Motif HL_79299.6 Version HL_79299.6 of this group appears in releases 3.20 to 3.27

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 51-52-4
1 HL_4U7U_0014U7U0.52021UNCGLcrRNAC51G52C54A55G56cWWtSW
2 HL_6CK5_0016CK50.67541 AGuanidine-I riboswitchA27U28U30G31U32cWWtSW
3 HL_5OB3_0015OB30.64411UNCGARNA aptamer (69-MER)G30U31C33G34C35cWWtSW
4 HL_3IGI_0083IGI0.29401UNCGAGroup IIC intronG338U339C341G342C343cWWtSW
5 HL_6DLR_0026DLR0.24991 AGuanidine-I riboswitchA61U62C64G65U66cWWtSW
6 HL_5ML7_0025ML70.20761UNCGB23S ribosomal RNAC2187G2188U2190A2191G2192cWW
7 HL_1NBS_0061NBS0.20201UNCGB RNase P class BC152U153C155G156G157cWWtSW
8 HL_3U4M_0013U4M0.13491UNCGB LSU rRNAC2143U2144C2146G2147G2148cWWtSW
9 HL_2HW8_0012HW80.11341UNCGB36-MERC15U16C18G19G20cWWtSW
10 HL_6CZR_0806CZR0.13471 1a SSU rRNAC338U339C341G342G343cWWtSW
11 HL_4V88_1964V880.12541UNCGA6 SSU rRNAC414C415A417G418G419cWWtSW
12 HL_1I6U_0011I6U0.15331UNCGC16S RRNA FRAGMENTC16U17C19G20G21cWWtSW
13 HL_5J7L_0305J7L0.12721UNCGAA SSU rRNAC1449U1450C1452G1453G1454cWWtSW
14 HL_5J7L_0115J7L0.08441UNCGAA SSU rRNAC419U420C422G423G424cWWtSW
15 HL_4LFB_0114LFB0.09801UNCGA SSU rRNAC419U420C422G423G424cWWtSW
16 HL_4PMI_0024PMI0.10851UNCGARev-Response-Element RNAC53||||13_455U54||||13_455C56||||13_455G57||||13_455G58||||13_455cWWtSW
17 HL_4PMI_0014PMI0.10851UNCGARev-Response-Element RNAC53||||12_455U54||||12_455C56||||12_455G57||||12_455G58||||12_455cWWtSW
18 HL_4PMI_0034PMI0.10851UNCGARev-Response-Element RNAC53||||18_445U54||||18_445C56||||18_445G57||||18_445G58||||18_445cWWtSW
19 HL_4PMI_0054PMI0.10851UNCGARev-Response-Element RNAC53||||24_444U54||||24_444C56||||24_444G57||||24_444G58||||24_444cWWtSW
20 HL_4PMI_0044PMI0.10851UNCGARev-Response-Element RNAC53U54C56G57G58cWWtSW
21 HL_4PMI_0064PMI0.10851UNCGARev-Response-Element RNAC53||||6_445U54||||6_445C56||||6_445G57||||6_445G58||||6_445cWWtSW
22 HL_4Y4O_1444Y4O0.09311UNCG2A LSU rRNAC1691U1692C1694G1695G1696cWWtSW
23 HL_5J7L_1755J7L0.09821UNCGDA LSU rRNAC1691U1692C1694G1695G1696cWWtSW
24 HL_4IOA_0414IOA0.14871UNCGX LSU rRNAC1708U1709C1711G1712G1713cWWtSW
25 HL_4WF9_0404WF90.15861UNCGX LSU rRNAC1735U1736C1738G1739G1740cWWtSW
26 HL_5TBW_0435TBW0.16161UNCG1 LSU rRNAC1923U1924C1926G1927G1928cWWtSW
27 HL_5J7L_0095J7L0.15511UNCGAA SSU rRNAC342U343C345G346G347cWWtSW
28 HL_4LFB_0094LFB0.11221UNCGA SSU rRNAC342U343C345G346G347cWWtSW
29 HL_4AY2_0014AY20.12911UNCGC5'-R-PPP(GP*GP*CP*GP*CP*GP*GP*CP*UP*UP*CP*GP*GP*CP *CP*GP*CP*GP*CP*C)-3'C8U9C11G12G13cWWtSW
30 HL_1UN6_0031UN60.11671UNCGF5S RIBOSOMAL RNAC15U16C18G19G64cWWtSW
31 HL_6QN3_0036QN30.12061 B Glutamine-IIC9U10C12G13G14cWWtSW
32 HL_4JF2_0034JF20.09471UNCGAPreQ1-II RiboswitchC60U61C63G64G65cWWtSW
33 HL_5LYS_0025LYS0.09191UNCGB7SK RNAC48U48|||AC48|||CG48|||DG60cWWtSW
34 HL_5Y85_0045Y850.00001UNCGDDNA/RNA (50-MER)C28U29C31G32G33cWWtSW
35 HL_5D5L_0035D5L0.07521UNCGAPreQ1-II riboswitchC60U61C63G64G65cWWtSW
36 HL_4V9F_0444V9F0.09951UNCG0 LSU rRNAC1769U1770C1772G1773G1774cWWtSW
37 HL_4PDB_0014PDB0.10361UNCGISELEX RNA aptamerC17U18C20G21G22cWWtSW
38 HL_4LFB_0314LFB0.12191UNCGA SSU rRNAC1449U1450C1452G1453G1454cWWtSW
39 HL_6QN3_0016QN30.10981 A Glutamine-IIC9U10C12G13G14cWWtSW
40 HL_1KUQ_0011KUQ0.14691UNCGB16S RIBOSOMAL RNA FRAGMENTC8U9C11G12G13cWWtSW
41 HL_5J7L_1715J7L0.20821UNCGDA LSU rRNAC1533U1534C1536G1537G1538cWWtSW
42 HL_6CZR_0826CZR0.33951 1a SSU rRNAC415U416C418G419G420cWWtSW
43 HL_5J7L_0055J7L0.40891UNCGAA SSU rRNAC207U208C210G211G212cWWntSW
44 HL_3V7E_0023V7E0.49751Other HLC SAM-I riboswitchC65U66C68G69G70cWW
45 HL_2CZJ_0072CZJ0.83321Other HLHtmRNA (63-MER)G25U26C28G29C30cWW
46 HL_6DME_0026DME0.82551 AppGpp RiboswitchC57U58C60G61G62cWW
47 HL_1P6V_0011P6V0.67611Other HLB45-MERC26U27C29G30G31cWW
48 HL_6JQ6_0026JQ60.65521 URNA (81-MER)C45||||11_555U46||||11_555C48||||11_555G49||||11_555G50||||11_555cWW
49 HL_6JQ6_0046JQ60.65521 URNA (81-MER)C45U46C48G49G50cWW
50 HL_2NUE_0012NUE0.62671Other HLC46-MERC21G22A24A25G26cWWncSW
51 HL_4Y4O_1114Y4O0.82962Other HL2A LSU rRNAG271|||IC271|||JU271|||LG271|||MC271|||OcWW
52 HL_5J7L_2005J7L0.80312Other HLDA LSU rRNAC2795U2796U2798A2799G2801cWWncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUCGG34
CUACGG6
GUUCGC2
CGCCAG1
AUUUGU1
GUACGC1
AUUCGU1
CGCUAG1
CUCCGG1
CCAAGG1
CGCAAG1
GCUUGUC1
CUUUAAG1
Non-Watson-Crick part of the motif
SequenceCounts
UUCG37
UACG7
GCCA1
UUUG1
GCUA1
UCCG1
CAAG1
GCAA1
CUUGU1
UUUAA1

Release history

Release3.203.213.223.233.243.253.263.27
Date2019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-08
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • UNCG (37)
  • Other HL (6)
    • Basepair signature
    cWW-tSW-R
    Heat map statistics
    Min 0.07 | Avg 0.40 | Max 1.02
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