Motif HL_80922.1 Version HL_80922.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_151 | 5J7L | 0.3189 | 2 | DA | LSU rRNA | C | 611 | G | 612 | A | 614 | A | 616 | G | 617 | cWW | tSH |
| 2 | HL_2B3J_001 | 2B3J | 0.3153 | 4 | E | anticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42) | A | 31 | C | 32 | G | 36 | A | 38 | U | 39 | cWW | |
| 3 | HL_4V9F_019 | 4V9F | 0.0000 | 2 | 0 | LSU rRNA | G | 670 | A | 671 | U | 673 | U | 675 | C | 676 | cWW | tSH |
| 4 | HL_4V88_197 | 4V88 | 0.5662 | 2 | A6 | SSU rRNA | U | 450 | A | 451 | U | 453 | C | 455 | A | 456 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAUAG | 1 |
| ACUCGGAU | 1 |
| GAGUAUC | 1 |
| UAAUUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAUA | 1 |
| CU(P5P)CGGA | 1 |
| AGUAU | 1 |
| AAUUC | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.32 | Avg 0.39 | Max 0.85
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