Motif HL_81508.1 Version HL_81508.1 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_041 | 4WF9 | 0.6549 | 1 | X | LSU rRNA | G | 1761 | U | 1762 | U | 1763 | A | 1765 | C | 1766 | G | 1767 | C | 1768 | cWW | ncWW | ntsS | ||
| 2 | HL_5J7L_006 | 5J7L | 0.2057 | 2 | AA | SSU rRNA | G | 259 | G | 260 | U | 261 | A | 263 | C | 264 | G | 265 | C | 267 | cWW | ||||
| 3 | HL_4LFB_006 | 4LFB | 0.1475 | 2 | A | SSU rRNA | G | 259 | G | 260 | U | 261 | A | 263 | U | 264 | G | 265 | C | 267 | cWW | ||||
| 4 | HL_4V88_193 | 4V88 | 0.0000 | 2 | A6 | SSU rRNA | G | 330 | A | 331 | U | 332 | G | 334 | U | 335 | G | 336 | C | 338 | cWW | ||||
| 5 | HL_1U9S_003 | 1U9S | 0.4506 | 2 | A | RIBONUCLEASE P | G | 181 | G | 182 | U | 183 | A | 185 | G | 186 | A | 187 | C | 189 | cWW | ||||
| 6 | HL_6DLR_003 | 6DLR | 0.5489 | 2 | A | Guanidine-I riboswitch | G | 82 | A | 83 | U | 84 | G | 86 | A | 87 | A | 88 | C | 90 | cWW | tWH | tWH | ||
| 7 | HL_4KQY_003 | 4KQY | 0.5624 | 2 | A | SAM-I riboswitch | C | 94 | U | 95 | C | 96 | A | 98 | A | 99 | C | 100 | G | 102 | cWW | ||||
| 8 | HL_4KQY_006 | 4KQY | 0.5624 | 2 | A | SAM-I riboswitch | C | 94||||4_555 | U | 95||||4_555 | C | 96||||4_555 | A | 98||||4_555 | A | 99||||4_555 | C | 100||||4_555 | G | 102||||4_555 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCGAACAG | 2 |
| GUUAACGC | 1 |
| GGUAACGGC | 1 |
| GGUAAUGGC | 1 |
| GAUAGUGGC | 1 |
| GGUAAGAGC | 1 |
| GAUAGAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCGAACA | 2 |
| UUAACG | 1 |
| GUAACGG | 1 |
| GUAAUGG | 1 |
| AUAGUGG | 1 |
| GUAAGAG | 1 |
| AUAGAAG | 1 |
Coloring options: