Motif HL_82201.1 Version HL_82201.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-7 | 3-8 | 4-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V7M_040 | 4V7M | 0.4454 | 1 | AY | tRNA | G | 51 | G | 52 | U | 53 | U | 54 | C | 55 | G | 56 | A | 57 | U | 59 | C | 60 | C | 61 | cWW | |||||
| 2 | HL_4V9I_040 | 4V9I | 0.4733 | 1 | AY | tRNA | C | 52 | A | 53 | A | 54 | C | 55 | U | 56 | C | 57 | U | 58 | C | 60 | C | 61 | G | 62 | cWW | ncWW | ||||
| 3 | HL_4WSM_226 | 4WSM | 0.3771 | 1 | 3L | tRNA | G | 63 | G | 64 | U | 65 | U | 66 | C | 67 | A | 68 | A | 69 | U | 71 | C | 72 | C | 73 | cWW | ncWW | ntWH | |||
| 4 | HL_1P6V_002 | 1P6V | 0.0000 | 1 | B | 45-MER | G | 44 | G | 45 | U | 46 | U | 47 | C | 48 | G | 49 | A | 50 | U | 52 | C | 53 | C | 54 | cWW | cWW | ntWW | |||
| 5 | HL_4V88_208 | 4V88 | 0.5097 | 1 | A6 | SSU rRNA | G | 997 | A | 998 | U | 999 | C | 1000 | A | 1001 | G | 1002 | A | 1003 | A | 1005 | C | 1006 | C | 1007 | cWW | |||||
| 6 | HL_5J7L_017 | 5J7L | 0.4976 | 1 | AA | SSU rRNA | G | 786 | A | 787 | U | 788 | U | 789 | A | 790 | G | 791 | A | 792 | A | 794 | C | 795 | C | 796 | cWW | ncWB | ||||
| 7 | HL_4LFB_017 | 4LFB | 0.5078 | 1 | A | SSU rRNA | G | 786 | A | 787 | U | 788 | U | 789 | A | 790 | G | 791 | A | 792 | A | 794 | C | 795 | C | 796 | cWW | ncWB | ||||
| 8 | HL_6CZR_088 | 6CZR | 0.5614 | 1 | 1a | SSU rRNA | G | 770 | A | 771 | U | 772 | U | 773 | A | 774 | G | 775 | A | 776 | A | 778 | C | 779 | C | 780 | ncWW | ncWB | ||||
| 9 | HL_6DME_003 | 6DME | 0.6002 | 1 | A | ppGpp Riboswitch | G | 78 | G | 79 | A | 80 | U | 81 | A | 82 | A | 83 | A | 84 | A | 85 | A | 87 | C | 88 | cWW | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUUAGAUACC | 3 |
| GGUUCGAAUCC | 1 |
| CAACUCUACCG | 1 |
| GGUUCAAGUCC | 1 |
| GGUUCGAUUCC | 1 |
| GAUCAGAUACC | 1 |
| GGAUAAAAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUAGAUAC | 3 |
| GUUCGAAUC | 1 |
| AACUCUACC | 1 |
| GUUCAAGUC | 1 |
| GUUCGAUUC | 1 |
| AUCAGAUAC | 1 |
| GAUAAAAGA | 1 |
- Annotations
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.39 | Max 0.63
Coloring options: