Motif HL_82710.2 Version HL_82710.2 of this group appears in releases 3.91 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1U63_002 | 1U63 | 0.6468 | 1 | D | 49 NT FRAGMENT OF MRNA FOR L1 | G | 20 | A | 22 | C | 23 | U | 24 | C | 25 | cWW |
| 2 | HL_9DFE_003 | 9DFE | 0.0000 | 1 | 1A | LSU rRNA | G | 123 | G | 124 | A | 126 | A | 127 | C | 128 | cWW |
| 3 | HL_5J7L_136 | 5J7L | 0.0915 | 1 | DA | LSU rRNA | G | 123 | G | 124 | A | 126 | A | 127 | C | 128 | cWW |
| 4 | HL_7A0S_003 | 7A0S | 0.1504 | 1 | X | LSU rRNA | G | 121 | G | 122 | A | 124 | A | 125 | C | 126 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAAC | 2 |
| GAACUC | 1 |
| GGGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 2 |
| AACU | 1 |
| GGAA | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.30 | Max 0.70
Coloring options: