Motif HL_83808.1 Version HL_83808.1 of this group appears in releases 3.77 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_036 | 7A0S | 0.8569 | 4 | X | LSU rRNA | C | 1466 | U | 1467 | G | 1470 | G | 1471 | U | 1473 | A | 1474 | G | 1476 | cWW | ||
| 2 | HL_4PRF_001 | 4PRF | 0.3659 | 3 | B | Hepatitis Delta virus ribozyme | C | 119 | U | 120 | C | 121 | C | 122 | C | 124 | G | 125 | G | 128 | cWW | ntWW | |
| 3 | HL_3NKB_001 | 3NKB | 0.0000 | 2 | B | The hepatitis delta virus ribozyme | C | 20 | U | 21 | C | 22 | C | 23 | C | 25 | G | 26 | G | 28 | cWW | tWW | |
| 4 | HL_4PR6_001 | 4PR6 | 0.1014 | 3 | B | HDV RIBOZYME SELF-CLEAVED | C | 119 | U | 120 | C | 121 | C | 122 | C | 124||A | G | 125 | G | 128 | cWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCCUCGCUG | 2 |
| CUAUGGCUAUG | 1 |
| CUCCUCGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCCUCGCU | 2 |
| UAUGGCUAU | 1 |
| UCCUCGC | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tWW-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.42 | Max 0.86
Coloring options: