Motif HL_84299.4 Version HL_84299.4 of this group appears in releases 3.96 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2BH2_002 | 2BH2 | 0.5632 | 1 | D | 23S RIBOSOMAL RNA 1932-1968 | G | 1949 | G | 1950 | U | 1951 | A | 1952 | G | 1954 | U | 1955 | U | 1956 | C | 1957 | cWW | ncSH | |||
| 2 | HL_8P9A_197 | 8P9A | 0.0000 | 1 | GNRA related (H) | sR | SSU rRNA | G | 330 | A | 331 | U | 332 | A | 333 | G | 334 | U | 335 | G | 336 | C | 338 | cWW | |||
| 3 | HL_8CRE_198 | 8CRE | 0.0521 | 1 | GNRA related (H) | CM | SSU rRNA | G | 328 | A | 329 | U | 330 | A | 331 | G | 332 | U | 333 | G | 334 | C | 336 | cWW | |||
| 4 | HL_5J7L_006 | 5J7L | 0.1769 | 1 | GNRA related | AA | SSU rRNA | G | 259 | G | 260 | U | 261 | A | 262 | A | 263 | C | 264 | G | 265 | C | 267 | cWW | |||
| 5 | HL_4LFB_006 | 4LFB | 0.1579 | 1 | GNRA related | A | SSU rRNA | G | 259 | G | 260 | U | 261 | A | 262 | A | 263 | U | 264 | G | 265 | C | 267 | cWW | |||
| 6 | HL_4R4V_003 | 4R4V | 0.3596 | 1 | T-loop related | A | VS ribozyme RNA | G | 689 | U | 690 | U | 691 | G | 692 | A | 693 | C | 694 | A | 696 | C | 697 | cWW | |||
| 7 | HL_5T83_003 | 5T83 | 0.4357 | 1 | A | Guanidine-I riboswitch | G | 77 | A | 78 | U | 79 | A | 80 | A | 81 | A | 82 | A | 83 | C | 85 | cWW | ntWH | tWH | ||
| 8 | HL_6DLR_003 | 6DLR | 0.4672 | 1 | A | Guanidine-I riboswitch | G | 82 | A | 83 | U | 84 | A | 85 | G | 86 | A | 87 | A | 88 | C | 90 | cWW | tWH | tWH | ||
| 9 | HL_7MLW_003 | 7MLW | 0.4662 | 1 | F | Guanidine-I riboswitch | G | 112 | A | 113 | U | 114 | A | 115 | A | 116 | A | 117 | A | 118 | C | 120 | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAGUGGC | 2 |
| GAUAAAAGC | 2 |
| GGUAAGUUC | 1 |
| GGUAACGGC | 1 |
| GGUAAUGGC | 1 |
| GUUGACUAC | 1 |
| GAUAGAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAGUGG | 2 |
| AUAAAAG | 2 |
| GUAAGUU | 1 |
| GUAACGG | 1 |
| GUAAUGG | 1 |
| UUGACUA | 1 |
| AUAGAAG | 1 |
- Annotations
-
- (4)
- GNRA related (2)
- GNRA related (H) (2)
- T-loop related (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.05 | Avg 0.37 | Max 0.78
Coloring options: