Motif HL_84827.1 Version HL_84827.1 of this group appears in releases 3.86 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S03_002 | 1S03 | 0.8256 | 1 | B | 47-MER | A | 22 | G | 23 | G | 24 | C | 25 | A | 26 | A | 27 | U | 29 | cWW | ntSH | |
| 2 | HL_4V9F_038 | 4V9F | 0.4678 | 1 | 0 | LSU rRNA | G | 1557 | C | 1558 | A | 1559 | U | 1561 | C | 1562 | G | 1563 | C | 1564 | cWW | ncWW | |
| 3 | HL_8C3A_037 | 8C3A | 0.0000 | 2 | 1 | LSU rRNA | G | 1676 | U | 1677 | U | 1678 | U | 1680 | C | 1681 | U | 1682 | U | 1684 | cWW | ncwW | |
| 4 | HL_5TBW_037 | 5TBW | 0.1229 | 2 | 1 | LSU rRNA | G | 1680 | U | 1681 | U | 1682 | U | 1684 | C | 1685 | U | 1686 | U | 1688 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAUCUUU | 2 |
| AGGCAAUU | 1 |
| GCAUUCGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAUCUU | 2 |
| GGCAAU | 1 |
| CAUUCG | 1 |
Release history
| Release | 3.86 |
|---|---|
| Date | 2024-07-17 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.44 | Max 0.85
Coloring options: