Motif HL_85367.1 Version HL_85367.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_206 | 8P9A | 0.7434 | 1 | sR | SSU rRNA | U | 764 | U | 766 | U | 767 | C | 768 | A | 769 | A | 770 | A | 771 | G | 772 | cWW | tWH |
| 2 | HL_8C3A_208 | 8C3A | 0.7259 | 1 | CM | SSU rRNA | U | 749 | U | 751 | U | 752 | C | 753 | A | 754 | A | 755 | A | 756 | G | 757 | cWW | tWH |
| 3 | HL_4V9F_055 | 4V9F | 0.1318 | 1 | 0 | LSU rRNA | C | 2281 | U | 2282 | G | 2284 | G | 2285 | G | 2286 | C | 2287 | G | 2288 | G | 2289 | cWW | |
| 4 | HL_8P9A_165 | 8P9A | 0.1066 | 1 | AR | LSU rRNA | C | 2616 | U | 2617 | G | 2619 | G | 2620 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | cWW | |
| 5 | HL_7A0S_052 | 7A0S | 0.1096 | 1 | X | LSU rRNA | C | 2227 | U | 2228 | G | 2230 | G | 2231 | G | 2232 | C | 2233 | G | 2234 | G | 2235 | cWW | |
| 6 | HL_4WF9_049 | 4WF9 | 0.0000 | 1 | X | LSU rRNA | C | 2275 | U | 2276 | G | 2278 | G | 2279 | G | 2280 | C | 2281 | G | 2282 | G | 2283 | cWW | |
| 7 | HL_5J7L_186 | 5J7L | 0.0955 | 1 | DA | LSU rRNA | C | 2248 | U | 2249 | OMG | 2251 | G | 2252 | G | 2253 | C | 2254 | G | 2255 | G | 2256 | cWW | |
| 8 | HL_9DFE_051 | 9DFE | 0.1309 | 1 | 1A | LSU rRNA | C | 2248 | U | 2249 | OMG | 2251 | G | 2252 | G | 2253 | C | 2254 | G | 2255 | G | 2256 | cWW | |
| 9 | HL_4V84_034 | 4V84 | 0.4485 | 0 | AV | RNA (34-MER) | U | 6185 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | cWW | |
| 10 | HL_4V83_220 | 4V83 | 0.4427 | 0 | CV | domain 3 of PSIC IGR IRES RNA | U | 6161 | U | 6162 | A | 6163 | A | 6164 | G | 6165 | U | 6166 | G | 6167 | G | 6168 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGGGCGG | 4 |
| UGUUCAAAG | 2 |
| CUGGGCGG | 1 |
| CUG(OMG)GGCGG | 1 |
| UUAGGUAG | 1 |
| UUAAGUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGGGCG | 4 |
| GUUCAAA | 2 |
| UG(OMG)GGCG | 2 |
| UAGGUA | 1 |
| UAAGUG | 1 |
- Annotations
-
- (10)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.41 | Max 0.95
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