Motif HL_85603.1 Version HL_85603.1 of this group appears in releases 3.87 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-5
1	HL_6CZR_083	6CZR	0.4636	1	GNRA	1a	SSU rRNA	C	453	G	454	A	455	G	457	A	458	G	459	cWW	ntSH
2	HL_4LFB_012	4LFB	0.4126	1	GNRA	A	SSU rRNA	C	458	G	459	A	460	G	462	A	463	G	474	cWW	tSH
3	HL_8VTW_042	8VTW	0.4866	1	GNRA	1A	LSU rRNA	U	1720	G	1721	A	1722	G	1740	A	1741	G	1742	cWW
4	HL_5TBW_042	5TBW	0.5193	1	GNRA	1	LSU rRNA	U	1862	G	1863	A	1864	A	1865	A	1867	G	1868	cWW	tSH
5	HL_8C3A_042	8C3A	0.4807	1	GNRA	1	LSU rRNA	U	1858	U	1859	A	1860	A	1861	A	1863	G	1864	cWW	ntSH
6	HL_4WF9_021	4WF9	0.4517	1	GNRA	X	LSU rRNA	U	686	G	687	A	688	A	689	A	691	G	692	cWW	ntSH
7	HL_8VTW_020	8VTW	0.3989	1	GNRA	1A	LSU rRNA	C	641	G	642	A	643	A	644	A	646	G	647	cWW	ntSH
8	HL_5O7H_001	5O7H	0.2911	1	GNRA	A	crRNA	C	32	G	33	C	34	A	35	A	37	G	38	cWW	ntSH
9	HL_6VMY_001	6VMY	0.3642	1	GNRA	A	Cobalamin riboswitch	U	223	G	224	A	225	A	226	A	228	A	229	cWW	ntSH
10	HL_1XJR_001	1XJR	0.3600	1	GNRA	A	s2m RNA	G	21	G	22	A	23	G	24	A	26	C	27	cWW	tSH
11	HL_5J7L_174	5J7L	0.3229	1	GNRA	DA	LSU rRNA	A	1630	G	1631	A	1632	G	1633	A	1635	U	1636	cWW	tSH
12	HL_7WKP_001	7WKP	0.2985	1	GNRA	B	3' stem loop crRNA	C	10	G	11	C	12	A	13	A	15	G	16	cWW	tSH
13	HL_2XLK_001	2XLK	0.2477	1	GNRA	C	RNA (16-mer)	C	10	G	11	U	12	A	13	A	15	G	16	cWW	tSH
14	HL_4AL5_001	4AL5	0.2657	1	GNRA	B	RNA (20-mer)	C	10	G	11	U	12	A	13	A	15	G	16	cWW	tSH
15	HL_3D0U_003	3D0U	0.3089	1	GNRA	A	Lysine Riboswitch RNA	G	121	G	122	A	123	A	124	A	126	C	127	cWW	tSH
16	HL_5LM7_001	5LM7	0.2775	1	GNRA	G	RNA (29-MER)	U	21	G	22	A	23	A	24	A	26	A	27	cWW	ntSH
17	HL_3DIL_003	3DIL	0.3782	1	GNRA	A	RNA (174-MER)	G	124	G	125	A	126	A	127	A	129	C	130	cWW	tSH
18	HL_4V9F_016	4V9F	0.4209	1	GNRA	0	LSU rRNA	U	493	C	494	A	495	G	496	A	498	G	499	cWW	ntSH
19	HL_4V9F_036	4V9F	0.4206	1	GNRA	0	LSU rRNA	G	1468	C	1469	A	1470	A	1471	C	1472	C	1474	cWW	tSHa
20	HL_1G1X_004	1G1X	0.3475	0	GNRA	I	16S RIBOSOMAL RNA	C	590	G	591	A	592	A	593	A	594	G	649	cWW
21	HL_4V88_217	4V88	0.3373	1	GNRA	A6	SSU rRNA	U	1396	U	1397	U	1398	A	1400	A	1401	G	1402	cWW	ntSH
22	HL_5TBW_048	5TBW	0.2310	0	GNRA	1	LSU rRNA	A	2220	G	2221	A	2222	A	2223	A	2224	U	2225	cWW
23	HL_3SUX_002	3SUX	0.1917	0	GNRA	X	THF riboswitch	C	65	G	66	A	67	A	68	A	69	G	70	cWW
24	HL_8C3A_048	8C3A	0.2124	0	GNRA	1	LSU rRNA	A	2198	G	2199	A	2200	A	2201	A	2202	U	2203	cWW
25	HL_8C3A_215	8C3A	0.1891	0	GNRA	CM	SSU rRNA	A	1069	G	1070	A	1071	A	1072	A	1073	U	1074	cWW
26	HL_4V88_210	4V88	0.2128	0	GNRA	A6	SSU rRNA	A	1084	G	1085	A	1086	A	1087	A	1088	U	1089	cWW
27	HL_4Y1M_004	4Y1M	0.2118	0	GNRA	B	E. coli yybP-ykoY riboswitch	A	81	G	82	A	83	A	84	A	85	U	86	cWW	ntSH
28	HL_6CZR_091	6CZR	0.1702	0	GNRA	1a	SSU rRNA	C	875	G	876	C	877	A	878	A	879	G	880	cWW
29	HL_6UFG_004	6UFG	0.1997	0	GNRA	A	RNA (166-MER)	C	105	G	106	A	107	A	108	A	109	G	110	cWW	ntSH
30	HL_8VU0_002	8VU0	0.2509	0	GNRA	C	tRNA	C	33	G	34	A	35	A	36	A	37	G	38	cWW
31	HL_6CU1_002	6CU1	0.2551	0	GNRA	A	Y RNA-like	C	42	G	43	A	44	A	45	A	46	G	47	cWW
32	HL_6CB3_005	6CB3	0.2404	0	GNRA	B	RNA (99-MER)	G	50	G	51	A	52	A	53	A	54	C	55	cWW
33	HL_4OQU_001	4OQU	0.2252	0	GNRA	A	SAM-I/IV riboswitch	G	13	G	14	A	15	G	16	A	17	C	18	ncWW
34	HL_1UN6_004	1UN6	0.1885	0	GNRA	F	5S RIBOSOMAL RNA	G	82	G	83	A	84	A	85	A	86	C	94	cWW	ntSH
35	HL_8C3A_011	8C3A	0.1340	0	GNRA	1	LSU rRNA	U	382	G	383	A	384	A	385	A	386	A	387	cWW	ntSH
36	HL_5VW1_001	5VW1	0.1317	0	GNRA	C	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
37	HL_6JOO_001	6JOO	0.1367	0	GNRA	B	Guide RNA	G	32	G	33	A	34	A	35	A	36	C	37	cWW	ntSH
38	HL_6UFH_002	6UFH	0.1494	0	GNRA	A	RNA (167-MER)	G	45	G	46	A	47	A	48	A	49	C	50	cWW	ntSH
39	HL_5F9F_003	5F9F	0.1680	0	GNRA	F	RNA (24-mer)	A	10	G	11	U	12	G	13	A	14	U	15	cWW
40	HL_5B2T_001	5B2T	0.1619	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
41	HL_2ZZM_003	2ZZM	0.1996	0	GNRA	B	RNA (84-MER)	C	47	G	47\|\|\|A	U	47\|\|\|B	A	47\|\|\|C	G	47\|\|\|D	G	47\|\|\|E	cWW
42	HL_4V9F_060	4V9F	0.2091	0	GNRA	0	LSU rRNA	C	2411	G	2412	A	2413	A	2414	A	2415	G	2416	cWW
43	HL_6N2V_001	6N2V	0.1871	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	G	24	G	25	A	26	A	27	A	28	C	29	cWW
44	HL_5J7L_152	5J7L	0.1736	0	GNRA	DA	LSU rRNA	G	629	G	630	A	631	A	632	A	633	C	634	cWW
45	HL_8C3A_060	8C3A	0.2102	0	GNRA	1	LSU rRNA	U	2716	G	2717	A	2718	A	2719	A	2720	G	2721	cWW
46	HL_5TBW_059	5TBW	0.2496	0	GNRA	1	LSU rRNA	U	2744	G	2745	A	2746	A	2747	A	2748	G	2749	cWW
47	HL_8C3A_016	8C3A	0.2497	0	GNRA	1	LSU rRNA	U	705	G	706	A	707	A	708	A	709	G	710	cWW
48	HL_5TBW_016	5TBW	0.2596	0	GNRA	1	LSU rRNA	U	707	G	708	A	709	A	710	A	711	G	712	cWW
49	HL_8VTW_046	8VTW	0.2461	0	GNRA	1A	LSU rRNA	U	1864	G	1865	C	1866	A	1876	A	1877	G	1878	cWW
50	HL_6CZR_095	6CZR	0.2947	0	GNRA	1a	SSU rRNA	C	1059	G	1060	U	1061	G	1062	A	1063	G	1064	cWW
51	HL_7QR8_001	7QR8	0.5536	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
52	HL_7JNH_001	7JNH	0.2920	0	GNRA	B	Core double ENE RNA (Xtal construct) from Oryza sativa transposon	C	43	G	44	A	45	A	46	A	47	G	48	cWW
53	HL_6CB3_006	6CB3	0.2846	0	GNRA	B	RNA (99-MER)	C	76	G	77	A	78	A	79	A	80	G	81	cWW
54	HL_3NKB_002	3NKB	0.2979	0	GNRA	B	Hepatitis delta virus ribozyme	C	49	G	50	A	51	A	52	A	53	G	54	cWW
55	HL_4QK9_002	4QK9	0.2547	0	GNRA	A	C-di-AMP riboswitch	C	56	G	57	U	58	A	59	A	60	G	61	cWW
56	HL_6JQ5_002	6JQ5	0.2283	0	GNRA	A	Hatchet ribozyme	C	45	G	46	A	47	A	48	A	49	G	50	cWW
57	HL_6U8D_002	6U8D	0.2003	0	GNRA	A	JIIIabc RNA (68-MER)	G	180	G	198	A	199	A	200	A	201	C	219	cWW
58	HL_7MKY_002	7MKY	0.2196	0	GNRA	A	RNA (66-MER)	G	40	G	41	A	42	A	43	A	44	C	45	cWW
59	HL_2OIU_003	2OIU	0.2405	0	GNRA	P	L1 Ribozyme RNA Ligase	C	59	G	60	A	61	A	62	A	63	G	64	cWW
60	HL_3E5C_002	3E5C	0.2583	0	GNRA	A	SMK box (SAM-III) Riboswitch	C	41	G	42	A	43	A	44	A	45	G	46	cWW
61	HL_4PQV_001	4PQV	0.2991	0	GNRA	A	Flavivirus 3' UTR stem loop IV	C	13	G	14	A	15	A	16	A	17	G	18	cWW
62	HL_3NPQ_001	3NPQ	0.2852	0	GNRA	A	SAH (S-adenosyl-L-homocysteine) riboswitch aptamer	C	20	G	21	A	22	G	23	A	24	G	25	cWW
63	HL_7A0S_020	7A0S	0.2459	0	GNRA	X	LSU rRNA	C	640	G	641	A	642	A	643	A	644	G	645	cWW
64	HL_7A0S_057	7A0S	0.2140	0	GNRA	X	LSU rRNA	G	2353	G	2354	A	2355	A	2356	A	2357	C	2358	cWW
65	HL_4WF9_054	4WF9	0.2331	0	GNRA	X	LSU rRNA	C	2401	G	2402	A	2403	A	2404	A	2405	G	2406	cWW
66	HL_5DDO_003	5DDO	0.2305	0	GNRA with GA tSW pair	B	L-glutamine riboswitch (58-MER)	G	11	G	12	A	13	A	14	A	15	C	16	cWW
67	HL_4ZT0_006	4ZT0	0.2674	0	GNRA with GA tSW pair	D	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW
68	HL_5VW1_003	5VW1	0.2490	0	GNRA with GA tSW pair	C	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW	ntsS
69	HL_6LAX_002	6LAX	0.3422	0	GNRA	A	SAM-VI (S-adenosyl methionine) riboswitch aptamer	U	42	G	43	A	44	A	45	A	46	A	47	cWW	ntsS
70	HL_6MJ0_008	6MJ0	0.2982	0	GNRA with GA tSW pair	B	tRNA-like 3' UTR element	C	49	G	50	A	51	A	52	A	53	G	54	cWW
71	HL_5TBW_033	5TBW	0.3933	0	GNRA variation	1	LSU rRNA	G	1544	A	1545	A	1546	G	1547	C	1548	U	1549	cWW
72	HL_8C3A_033	8C3A	0.4025	0	GNRA variation	1	LSU rRNA	G	1540	A	1541	A	1542	G	1543	C	1544	U	1545	cWW
73	HL_4WF9_065	4WF9	0.3011	0	GNRA	X	LSU rRNA	G	2876	G	2877	U	2878	G	2879	A	2880	C	2881	cWW
74	HL_7MRL_002	7MRL	0.2568	0	GNRA	A	tRNA	G	34	G	35	A	36	A	37	A	38	C	39	cWW
75	HL_6YMC_001	6YMC	0.2490	0	GNRA	A	RNA (26-MER)	G	11	G	12	A	13	A	14	A	15	C	16	cWW	ntSH
76	HL_6UFH_004	6UFH	0.2777	0	GNRA	A	RNA (167-MER)	C	106	G	107	A	108	A	109	A	110	G	111	cWW
77	HL_4LFB_028	4LFB	0.2536	0	GNRA	A	SSU rRNA	G	1265	G	1266	C	1267	A	1268	A	1269	C	1270	cWW
78	HL_7A0S_068	7A0S	0.2405	0	GNRA	X	LSU rRNA	A	2831	G	2832	C	2833	A	2834	A	2835	U	2836	cWW	ntSH
79	HL_4WF9_020	4WF9	0.2515	0	GNRA	X	LSU rRNA	C	674	G	675	A	676	A	677	A	678	G	679	cWW
80	HL_8VTW_019	8VTW	0.2187	0	GNRA	1A	LSU rRNA	G	629	G	630	A	631	A	632	A	633	C	634	cWW
81	HL_5J7L_202	5J7L	0.2282	0	GNRA	DA	LSU rRNA	A	2856	G	2857	C	2858	G	2859	A	2860	U	2861	cWW
82	HL_1U9S_004	1U9S	0.1960	0	GNRA	A	RIBONUCLEASE P	G	204	G	205	C	206	A	207	A	208	C	209	cWW	ntSH
83	HL_8C3A_010	8C3A	0.2959	0	GNRA	1	LSU rRNA	A	357	G	358	U	359	G	360	A	361	U	362	cWW
84	HL_5TBW_010	5TBW	0.2744	0	GNRA	1	LSU rRNA	A	357	G	358	U	359	G	360	A	361	U	362	cWW
85	HL_4V9F_015	4V9F	0.2751	0	GNRA	0	LSU rRNA	U	468	G	469	U	470	G	471	A	472	A	473	cWW
86	HL_8VTW_031	8VTW	0.3026	0	GNRA	1A	LSU rRNA	C	1222	G	1223	C	1224	G	1225	A	1226	G	1227	cWW
87	HL_4YAZ_003	4YAZ	0.2910	0	GNRA	R	Cyclic di-GMP-I riboswitch	C	25	G	26	C	27	G	28	A	29	G	30	cWW
88	HL_4V9F_017	4V9F	0.2994	0	GNRA	0	LSU rRNA	C	576	G	577	C	578	G	579	A	580	G	581	cWW
89	HL_4WFL_003	4WFL	0.2699	0	GNRA	A	LSRP RNA	G	81	G	82	U	83	A	84	A	85	C	86	cWW
90	HL_8C3A_065	8C3A	0.2587	0	GNRA	1	LSU rRNA	C	2935	G	2936	U	2937	G	2938	A	2939	G	2940	cWW
91	HL_7A0S_015	7A0S	0.2722	0	GNRA	X	LSU rRNA	C	473	G	474	U	475	G	476	A	477	G	478	cWW
92	HL_3G9C_008	3G9C	0.2510	0	GNRA	Q	glmS ribozyme	G	108	G	109	U	110	G	111	A	112	C	113	cWW
93	HL_8VTW_014	8VTW	0.2494	0	GNRA	1A	LSU rRNA	C	462	G	463	U	464	G	465	A	466	G	467	cWW
94	HL_5J7L_147	5J7L	0.2545	0	GNRA	DA	LSU rRNA	C	462	G	463	U	464	G	465	A	466	G	467	cWW
95	HL_4WF9_015	4WF9	0.2541	0	GNRA	X	LSU rRNA	C	508	G	509	U	510	G	511	A	512	G	513	cWW
96	HL_3W3S_003	3W3S	0.3068	0	GNRA	B	Selenocysteine transfer RNA	C	47\|\|\|F	G	47\|\|\|G	C	47\|\|\|H	A	47\|\|\|I	A	47\|\|\|J	G	47\|\|\|K	cWW
97	HL_4V9F_033	4V9F	0.3757	0	GNRA	0	LSU rRNA	C	1326	G	1327	A	1328	G	1329	A	1330	G	1331	cWW
98	HL_8C3A_030	8C3A	0.3663	0	GNRA	1	LSU rRNA	U	1399	G	1400	U	1401	A	1402	A	1403	A	1404	cWW
99	HL_8C3A_036	8C3A	0.3885	0	GNRA	1	LSU rRNA	G	1630	G	1631	C	1632	A	1633	A	1634	C	1635	cWW
100	HL_5TBW_030	5TBW	0.3680	0	GNRA	1	LSU rRNA	C	1403	G	1404	U	1405	A	1406	A	1407	G	1408	cWW
101	HL_5TBW_036	5TBW	0.3745	0	GNRA	1	LSU rRNA	G	1634	G	1635	U	1636	A	1637	A	1638	C	1639	cWW
102	HL_2BTE_003	2BTE	0.3665	0	GNRA	B	tRNA	C	46	G	47	C	47\|\|\|A	A	47\|\|\|B	A	47\|\|\|C	G	47\|\|\|D	cWW
103	HL_4WF9_059	4WF9	0.3345	0	GNRA	X	LSU rRNA	C	2621	G	2622	U	2623	G	2624	A	2625	G	2626	cWW
104	HL_8VTW_062	8VTW	0.2825	0	GNRA	1A	LSU rRNA	C	2594	G	2595	U	2596	G	2597	A	2598	G	2599	cWW
105	HL_7A0S_062	7A0S	0.2797	0	GNRA	X	LSU rRNA	C	2573	G	2574	U	2575	G	2576	A	2577	G	2578	cWW
106	HL_5U3G_002	5U3G	0.2507	0	GNRA	B	Guanidine-I riboswitch	C	47	G	48	A	49	A	50	A	51	G	52	cWW	ntSH
107	HL_3IGI_003	3IGI	0.2814	0	GNRA	A	Group IIC intron	G	89	G	90	C	91	G	92	A	93	C	94	cWW
108	HL_2Z75_004	2Z75	0.3098	0	GNRA	B	glmS ribozyme	G	113	G	114	C	115	G	116	A	117	C	118	cWW
109	HL_4LFB_024	4LFB	0.3257	0	GNRA	A	SSU rRNA	C	1076	G	1077	U	1078	G	1079	A	1080	G	1081	cWW
110	HL_5J7L_023	5J7L	0.3297	0	GNRA	AA	SSU rRNA	U	1076	G	1077	U	1078	G	1079	A	1080	A	1081	cWW
111	HL_5J7L_027	5J7L	0.3374	0	GNRA	AA	SSU rRNA	C	1265	G	1266	C	1267	G	1268	A	1269	G	1270	cWW
112	HL_4V88_214	4V88	0.3128	0	GNRA	A6	SSU rRNA	A	1296	G	1297	U	1298	G	1299	A	1300	U	1301	cWW
113	HL_8C3A_219	8C3A	0.2903	0	GNRA	CM	SSU rRNA	A	1281	G	1282	U	1283	G	1284	A	1285	U	1286	cWW
114	HL_7KKV_001	7KKV	0.2972	0	GNRA	B	OLE* RNA	G	500	G	501	U	502	G	503	A	504	C	505	cWW
115	HL_4V9F_065	4V9F	0.2815	0	GNRA	0	LSU rRNA	C	2629	G	2630	U	2631	G	2632	A	2633	G	2634	cWW
116	HL_5J7L_196	5J7L	0.2661	0	GNRA	DA	LSU rRNA	C	2594	G	2595	U	2596	G	2597	A	2598	G	2599	cWW
117	HL_5TBW_064	5TBW	0.2568	0	GNRA	1	LSU rRNA	C	2963	G	2964	U	2965	G	2966	A	2967	G	2968	cWW
118	HL_8VTW_068	8VTW	0.2722	0	GNRA	1A	LSU rRNA	C	2856	G	2857	C	2858	G	2859	A	2860	G	2861	cWW
119	HL_6DME_001	6DME	0.2505	0	GNRA	A	ppGpp Riboswitch	C	25	G	26	A	27	G	28	A	29	G	30	cWW
120	HL_4LVW_002	4LVW	0.3129	0	GNRA	A	THF riboswitch	C	58	G	59	A	60	G	61	A	62	G	63	cWW
121	HL_8VTW_070	8VTW	0.2831	0	GNRA	1B	5S rRNA	G	86	G	87	C	88	G	89	A	90	C	91	cWW
122	HL_7A0S_070	7A0S	0.2688	0	GNRA	Y	5S rRNA	C	88	G	89	C	90	A	91	G	92	G	93	cWW
123	HL_5J7L_191	5J7L	0.2251	0	GNRA	DA	LSU rRNA	C	2374	G	2375	A	2376	A	2377	A	2378	G	2379	cWW
124	HL_3NVI_002	3NVI	0.1805	0	GNRA	F	RNA (24-mer)	C	9	G	10	A	11	A	12	A	13	G	14	cWW	ntSH
125	HL_4NLF_001	4NLF	0.1916	0	GNRA	A	23S ribosomal RNA Sarcin Ricin Loop	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW	ntSH
126	HL_8HZL_002	8HZL	0.1430	0	GNRA	B	RNA (84-MER)	C	49	G	50	A	51	A	52	A	53	G	54	cWW	ntSH
127	HL_4V9F_048	4V9F	0.2283	0	GNRA	0	LSU rRNA	C	1862	G	1863	C	1864	A	1865	A	1866	G	1867	cWW	ntSH
128	HL_5J7L_020	5J7L	0.2164	0	GNRA	AA	SSU rRNA	C	897	G	898	C	899	A	900	A	901	G	902	cWW	ntSH
129	HL_4LFB_020	4LFB	0.1970	0	GNRA	A	SSU rRNA	C	897	G	898	C	899	A	900	A	901	G	902	cWW	ntSH
130	HL_8C3A_216	8C3A	0.1706	0	GNRA	CM	SSU rRNA	C	1106	G	1107	C	1108	A	1109	A	1110	G	1111	cWW	ntSH
131	HL_4V88_211	4V88	0.1735	0	GNRA	A6	SSU rRNA	C	1121	G	1122	C	1123	A	1124	A	1125	G	1126	cWW	ntSH
132	HL_5M0I_002	5M0I	0.1675	0	GNRA	F	ASH1-E3 element, RNA (28-MER)	C	12	G	13	A	14	A	15	A	16	G	17	cWW	ntSH
133	HL_5M0I_001	5M0I	0.1860	0	GNRA	E	ASH1-E3 element, RNA (28-MER)	C	12	G	13	A	14	A	15	A	16	G	17	cWW	ntSH
134	HL_5M0J_002	5M0J	0.1921	0	GNRA	F	ASH1 E3 (28 nt-loop)	C	12	G	13	A	14	A	15	A	16	G	17	cWW	ntSH
135	HL_5M0J_001	5M0J	0.2323	0	GNRA	E	ASH1 E3 (28 nt-loop)	C	12	G	13	A	14	A	15	A	16	G	17	cWW	ntSH
136	HL_7ELQ_001	7ELQ	0.1944	0	GNRA	A	NMT1 RNA	C	22	G	23	A	24	A	25	A	26	G	27	cWW	ntSH
137	HL_4V9F_040	4V9F	0.2503	0	GNRA	0	LSU rRNA	G	1628	G	1629	A	1630	A	1631	A	1632	C	1633	cWW	ntSH
138	HL_4LFB_003	4LFB	0.2506	0	GNRA	A	SSU rRNA	G	158	G	159	A	160	A	161	A	162	C	163	cWW	ntSH
139	HL_8C3A_019	8C3A	0.1952	0	GNRA	1	LSU rRNA	G	840	G	841	A	842	A	843	A	844	C	845	cWW	ntSH
140	HL_7ENI_001	7ENI	0.1782	0	GNRA	B	sgRNA (74-MER)	G	34	G	35	A	36	A	37	A	38	C	39	cWW	ntSH
141	HL_5J7L_003	5J7L	0.1676	0	GNRA	AA	SSU rRNA	G	158	G	159	A	160	A	161	A	162	C	163	cWW	ntSH
142	HL_5TBW_065	5TBW	0.1446	0	GNRA	1	LSU rRNA	C	3025	G	3026	A	3027	G	3028	A	3029	G	3030	cWW	ntSH
143	HL_5TBW_019	5TBW	0.1191	0	GNRA	1	LSU rRNA	G	844	G	845	A	846	A	847	A	848	C	849	cWW	ntSH
144	HL_4V9F_023	4V9F	0.1399	0	GNRA	0	LSU rRNA	C	804	G	805	A	806	A	807	A	808	G	809	cWW	ntSH
145	HL_1Q96_001	1Q96	0.1469	0	GNRA	A	sarcin/ricin 28S rRNA	U	13	G	14	A	15	G	16	A	17	A	18	cWW	ntSH
146	HL_6N2V_003	6N2V	0.1498	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	C	76	G	77	A	78	A	79	A	80	G	81	cWW	ntSH
147	HL_3LQX_001	3LQX	0.1537	0	GNRA	B	SRP RNA	C	153	G	154	A	155	A	156	A	157	G	158	cWW	tSH
148	HL_6N2V_002	6N2V	0.1128	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	C	56	G	57	A	58	A	59	A	60	G	61	cWW	ntSH
149	HL_4V9F_054	4V9F	0.1158	0	GNRA	0	LSU rRNA	C	2248	G	2249	G	2250	G	2251	A	2252	G	2253	cWW	ntSH
150	HL_1RLG_002	1RLG	0.0920	0	GNRA	D	25-MER	C	9	G	10	A	11	A	12	A	13	G	14	cWW	ntSH
151	HL_8X5V_001	8X5V	0.1163	0	GNRA	B	RNA (110-mer)	U	33	G	34	A	35	A	36	A	37	A	38	cWW	ntSH
152	HL_5FJC_002	5FJC	0.1020	0	GNRA	A	SAM-I riboswitch	A	49	G	50	A	51	A	52	A	53	U	54	cWW	ntSH
153	HL_4OQU_003	4OQU	0.1087	0	GNRA	A	SAM-I/IV riboswitch	G	57	G	58	A	59	G	60	A	61	C	62	cWW	ntSH
154	HL_1L9A_002	1L9A	0.1228	0	GNRA	B	signal recognition particle RNA S domain	G	197	G	198	A	199	A	200	A	201	C	202	cWW	ntSH
155	HL_3OXE_002	3OXE	0.1631	0	GNRA related	A	domain II of glycine riboswitch	G	49	G	50	A	51	A	52	A	53	C	54	cWW	ntSH
156	HL_3D0U_004	3D0U	0.1824	0	GNRA	A	Lysine Riboswitch RNA	C	142	G	143	A	144	A	145	A	146	G	147	cWW	ntSH
157	HL_1U9S_002	1U9S	0.1845	0	GNRA	A	RIBONUCLEASE P	G	99	G	100	U	101	A	102	A	103	C	104	cWW	ntSH
158	HL_5FQ5_001	5FQ5	0.2102	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
159	HL_7UQ6_002	7UQ6	0.1635	0	GNRA	B	tRNA	G	41	G	42	A	43	A	44	A	45	C	46	cWW	ntSH
160	HL_4WF9_060	4WF9	0.1701	0	GNRA	X	LSU rRNA	C	2685	G	2686	A	2687	G	2688	A	2689	G	2690	cWW	ntSH
161	HL_5FQ5_003	5FQ5	0.2022	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	ncWW	ntSH
162	HL_7QR0_003	7QR0	0.1764	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW	ntSH
163	HL_5J7L_148	5J7L	0.1794	1	GNRA	DA	LSU rRNA	C	487	G	488	G	489	G	491	A	492	G	493	cWW	tSH
164	HL_3P22_001	3P22	0.1254	0	GNRA	A	Core ENE hairpin from KSHV PAN RNA	C	17	G	18	A	19	A	20	A	21	G	22	cWW	ntSH
165	HL_4W90_003	4W90	0.1253	0	GNRA	C	cyclic di-AMP riboswitch	C	82	G	83	A	84	A	85	A	86	G	87	cWW	ntSH
166	HL_8VTW_015	8VTW	0.1033	0	GNRA	1A	LSU rRNA	C	487	G	488	G	489	G	491	A	492	G	493	cWW	tSH
167	HL_4WF9_016	4WF9	0.1328	0	GNRA	X	LSU rRNA	C	533	G	534	G	535	A	536	A	537	G	538	cWW	ntSH
168	HL_7A0S_016	7A0S	0.1423	0	GNRA	X	LSU rRNA	C	498	G	499	G	500	G	501	A	502	G	503	cWW	ntSH
169	HL_4V9F_009	4V9F	0.1100	0	GNRA	0	LSU rRNA	C	252	U	253	C	254	A	255	C	256	G	257	cWW	ntSH
170	HL_5TBW_017	5TBW	0.0794	0	GNRA	1	LSU rRNA	C	732	G	733	C	734	A	735	A	736	G	737	cWW	ntSH
171	HL_4Y1M_003	4Y1M	0.0986	0	GNRA	B	E. coli yybP-ykoY riboswitch	U	55	G	56	A	57	A	58	A	59	A	60	cWW	ntSH
172	HL_5X2G_001	5X2G	0.0774	0	GNRA	B	sgRNA	U	32	G	33	A	34	A	35	A	36	A	37	cWW	ntSH
173	HL_6AEG_003	6AEG	0.0971	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW	ntSH
174	HL_8ITS_002	8ITS	0.0759	0	GNRA	A	RNA (46-MER)	C	31	G	32	A	33	A	34	A	35	G	36	cWW	ntSH
175	HL_6TFF_001	6TFF	0.0736	0	GNRA	A	nadA RNA	C	27	G	28	A	29	A	30	A	31	G	32	cWW	ntSH
176	HL_8JOZ_003	8JOZ	0.0803	0	GNRA	B	tRNA	C	47\|\|\|B	G	47\|\|\|C	A	47\|\|\|D	A	47\|\|\|E	A	47\|\|\|F	G	47\|\|\|G	cWW	ntSH
177	HL_5TBW_011	5TBW	0.0832	0	GNRA	1	LSU rRNA	U	382	G	383	A	384	A	385	A	386	A	387	cWW	ntSH
178	HL_5B2P_001	5B2P	0.0849	0	GNRA	B	Guide RNA	C	35	G	36	A	37	A	38	A	39	G	40	cWW	tSH
179	HL_5J7L_197	5J7L	0.0856	0	GNRA	DA	LSU rRNA	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW	ntSH
180	HL_8VTW_063	8VTW	0.1048	0	GNRA	1A	LSU rRNA	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW	ntSH
181	HL_8VTW_045	8VTW	0.1155	0	GNRA	1A	LSU rRNA	C	1806	G	1807	U	1808	A	1809	A	1810	G	1811	cWW	ntSH
182	HL_4V9F_020	4V9F	0.1313	0	GNRA	0	LSU rRNA	G	690	G	691	A	692	A	693	A	694	C	695	cWW	ntSH
183	HL_5J7L_004	5J7L	0.1469	0	GNRA	AA	SSU rRNA	C	186	G	187	C	188	A	189	A	190	G	191	cWW	ntSH
184	HL_4R4V_004	4R4V	0.1364	0	GNRA	A	VS ribozyme RNA	C	735	G	736	U	737	A	738	A	739	G	740	cWW	ntSH
185	HL_5TBW_013	5TBW	0.1394	0	GNRA	1	LSU rRNA	C	599	G	600	U	601	A	602	A	603	G	604	cWW	ntSH
186	HL_4Y1M_002	4Y1M	0.1506	0	GNRA	B	E. coli yybP-ykoY riboswitch	C	24	G	25	A	26	A	27	A	28	G	29	cWW	ntSH
187	HL_3E5C_001	3E5C	0.1471	0	GNRA	A	SMK box (SAM-III) Riboswitch	G	18	G	19	A	20	A	21	A	22	C	23	cWW	tSH
188	HL_7U4A_003	7U4A	0.1663	0	GNRA	A	RNA (70-MER)	C	62	G	63	A	64	A	65	A	66	G	67	cWW	ntSH
189	HL_8C3A_074	8C3A	0.1537	0	GNRA	3	5S rRNA	G	88	G	89	A	90	G	91	A	92	C	93	cWW	ntSH
190	HL_5J7L_010	5J7L	0.1440	0	GNRA	AA	SSU rRNA	C	379	G	380	C	381	A	382	A	383	G	384	cWW	ntSH
191	HL_4LFB_010	4LFB	0.1748	0	GNRA	A	SSU rRNA	C	379	G	380	C	381	A	382	A	383	G	384	cWW	ntSH
192	HL_5TBW_186	5TBW	0.1632	0	GNRA	AS	5S rRNA	G	88	G	89	U	90	G	91	A	92	C	93	cWW	ntSH
193	HL_4V9F_072	4V9F	0.1993	0	GNRA	9	5S rRNA	C	89	G	90	C	91	G	92	A	93	G	94	cWW	ntSH
194	HL_3AM1_003	3AM1	0.1660	0	GNRA	B	ASL-truncated tRNA	C	45	G	46	A	47	G	48	A	49	G	50	cWW	ntSH
195	HL_8C3A_223	8C3A	0.2086	0	GNRA	CM	SSU rRNA	C	1488	G	1489	A	1490	G	1491	A	1492	G	1493	cWW	ntSH
196	HL_4V88_218	4V88	0.2399	0	GNRA	A6	SSU rRNA	C	1501	G	1502	A	1503	G	1504	A	1505	G	1506	cWW	ntSH
197	HL_6AZ4_001	6AZ4	0.1968	0	GNRA	A	RNA (32-MER)	U	20	G	21	A	22	A	23	A	24	G	25	cWW	ntSH
198	HL_6CB3_004	6CB3	0.1742	0	GNRA	B	RNA (99-MER)	G	20	G	21	A	22	A	23	A	24	C	25	cWW	ntSH
199	HL_4V9F_070	4V9F	0.1680	0	GNRA	0	LSU rRNA	G	2876	G	2877	U	2878	A	2879	A	2880	C	2881	cWW	ntSH
200	HL_6CZR_081	6CZR	0.1833	0	GNRA	1a	SSU rRNA	C	375	G	376	C	377	A	378	A	379	G	380	cWW
201	HL_7A0S_047	7A0S	0.2118	0	GNRA	X	LSU rRNA	U	1856	G	1857	C	1858	A	1859	A	1860	G	1861	cWW
202	HL_6UFH_005	6UFH	0.1673	0	GNRA	A	RNA (167-MER)	C	145	G	146	A	147	A	148	A	149	G	150	cWW	ntSH
203	HL_4ZT0_004	4ZT0	0.1502	0	GNRA	D	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW	ntSH
204	HL_5J7L_019	5J7L	0.1946	0	GNRA	AA	SSU rRNA	C	862	U	863	A	864	A	865	C	866	G	867	cWW	ntSH
205	HL_4LFB_019	4LFB	0.1750	0	GNRA	A	SSU rRNA	C	862	U	863	A	864	A	865	C	866	G	867	cWW	ntSH
206	HL_7MDL_003	7MDL	0.1539	0	GNRA	E	Selenocysteine transfer RNA	C	47\|\|A\|C	U	47\|\|A\|D	A	47\|\|A\|E	G	47\|\|A\|F	C	47\|\|A\|G	G	47\|\|A\|H	cWW	ntSHa
207	HL_8KAH_002	8KAH	0.1493	0	GNRA	I	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW
208	HL_2OIU_001	2OIU	0.0924	0	GNRA	P	L1 Ribozyme RNA Ligase	C	10	G	11	A	12	A	13	A	14	G	15	cWW	ntSH
209	HL_8C3A_066	8C3A	0.1285	0	GNRA	1	LSU rRNA	C	2997	G	2998	A	2999	G	3000	A	3001	G	3002	cWW	tSH
210	HL_4V9F_066	4V9F	0.1184	0	GNRA	0	LSU rRNA	C	2695	G	2696	A	2697	G	2698	A	2699	G	2700	cWW	ntSH
211	HL_7A0S_063	7A0S	0.1051	0	GNRA	X	LSU rRNA	C	2637	G	2638	A	2639	G	2640	A	2641	G	2642	cWW	tSH
212	HL_7R97_001	7R97	0.1043	0	GNRA	C	RNA (28-MER)	C	11	G	12	C	13	A	14	A	15	G	16	cWW	tSH
213	HL_3NDB_002	3NDB	0.1189	0	GNRA	M	SRP RNA	C	208	G	209	G	210	A	211	A	212	G	213	cWW	tSH
214	HL_8ITS_001	8ITS	0.0974	0	GNRA	A	RNA (46-MER)	C	15	G	16	A	17	A	18	A	19	G	20	cWW	ntSH
215	HL_5B2T_003	5B2T	0.0710	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW	ntSH
216	HL_8D28_002	8D28	0.0000	0	GNRA	B	RNA (33-MER)	C	13	G	14	A	15	A	16	A	17	G	18	cWW	ntSH
217	HL_3RW6_001	3RW6	0.0622	0	GNRA	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	G	27	G	28	A	29	A	30	A	31	C	32	cWW	tSH
218	HL_3MOJ_001	3MOJ	0.0796	0	GNRA	A	LSU rRNA	G	2529	G	2530	A	2531	A	2532	A	2533	C	2534	cWW	ntSH
219	HL_4RUM_002	4RUM	0.0802	0	GNRA	A	NiCo riboswitch	C	51	G	52	A	53	A	54	A	55	G	56	cWW	ntSH
220	HL_1MZP_001	1MZP	0.0872	0	GNRA	B	fragment of 23S rRNA	C	25	G	26	C	27	A	28	A	29	G	30	cWW	ntSH
221	HL_7ZO1_003	7ZO1	0.0797	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW	ntSH
222	HL_3PDR_001	3PDR	0.1297	0	GNRA	X	M-box riboswitch (ykoK leader)	C	68	C	69	A	70	A	71	A	72	G	73	cWW	ntSH
223	HL_5F9R_003	5F9R	0.1277	0	GNRA	A	tracrRNA	U	90	G	91	A	92	A	93	A	94	A	95	cWW	ntSH
224	HL_3KTW_002	3KTW	0.1286	0	GNRA	C	SRP RNA	C	209	G	210	G	211	A	212	A	213	G	214	cWW	ntSH
225	HL_7QQX_003	7QQX	0.1082	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW	ntSH
226	HL_3CUL_001	3CUL	0.1226	0	GNRA	C	RNA (92-MER)	C	7	G	8	A	9	A	10	A	11	G	12	cWW	ntSH
227	HL_5DCV_002	5DCV	0.1112	0	GNRA	D	RNA (47-MER)	G	26	G	27	A	28	A	29	A	30	C	31	cWW	ntSH
228	HL_5Y7M_002	5Y7M	0.0798	0	GNRA	D	RNA (52-MER)	C	24	G	25	A	26	A	27	A	28	G	29	cWW	ntSH
229	HL_7UZ0_002	7UZ0	0.1182	0	GNRA	A	tRNA	C	36	G	37	A	38	A	39	A	40	G	41	cWW	ntSH
230	HL_5XTM_001	5XTM	0.0990	0	GNRA	B	RNA (47-MER)	G	24	G	25	A	26	A	27	A	28	C	29	cWW	ntSH
231	HL_5XTM_002	5XTM	0.1003	0	GNRA	D	RNA (47-MER)	G	24	G	25	A	26	A	27	A	28	C	29	cWW	ntSH
232	HL_4LFB_027	4LFB	0.0947	0	GNRA	A	SSU rRNA	C	1165	G	1166	A	1167	A	1168	A	1169	G	1171	cWW	ntSH
233	HL_1U6B_001	1U6B	0.1110	0	GNRA	B	197-MER	G	23	G	24	A	25	A	26	A	27	C	28	cWW	ntSH
234	HL_1KH6_002	1KH6	0.1252	0	GNRA	A	JIIIabc	C	28	G	29	A	30	A	31	A	32	G	33	cWW	ntSH
235	HL_7WIE_001	7WIE	0.1118	0	GNRA	V	THF-II riboswitch (folE RNA)	C	31	G	32	A	33	A	34	A	35	G	37	cWW	ntSH
236	HL_4PLX_001	4PLX	0.0871	0	GNRA	A	Core ENE hairpin and A-rich tract from MALAT1	C	24	G	25	A	26	A	27	A	28	G	29	cWW	ntSH
237	HL_8HZE_002	8HZE	0.0666	0	GNRA	B	RNA (36-MER)	C	19	G	20	A	21	A	22	A	23	G	24	cWW	ntSH
238	HL_5UZ6_001	5UZ6	0.0725	0	GNRA	A	RNA (25-MER)	C	15	G	16	A	17	A	18	A	19	G	20	cWW	ntSH
239	HL_2R8S_001	2R8S	0.0752	0	GNRA	R	P4-P6 RNA RIBOZYME DOMAIN	G	149	G	150	A	151	A	152	A	153	C	154	cWW	ntSH
240	HL_5D5L_001	5D5L	0.0796	0	GNRA	A	PreQ1-II riboswitch	C	8	G	9	A	10	A	11	A	12	G	13	cWW	ntSH
241	HL_4JF2_001	4JF2	0.0703	0	GNRA	A	PreQ1-II Riboswitch	C	8	G	9	A	10	A	11	A	12	G	13	cWW	ntSH
242	HL_5VCI_001	5VCI	0.0735	0	GNRA	A	RNA (22-mer)	C	16	G	17	A	18	A	19	A	20	G	21	cWW	ntSH
243	HL_4PCJ_001	4PCJ	0.1214	0	GNRA	A	trCUG-3('5)	U	16	G	17	A	18	A	19	A	20	G	21	cWW	ntSH
244	HL_6WPI_001	6WPI	0.1200	0	GNRA	B	RNA (47-MER)	U	25	G	26	A	27	A	28	A	29	G	30	cWW	ntSH
245	HL_5M0H_001	5M0H	0.1278	0	GNRA	A	ASH1 E3 (42 nt-TL/TLR)	U	21	G	22	A	23	A	24	A	25	G	26	cWW	ntSH
246	HL_5BTM_001	5BTM	0.1235	0	GNRA	A	RNA (55-mer)	U	26	G	27	A	28	A	29	A	30	G	31	cWW	ntSH
247	HL_4K27_001	4K27	0.1069	0	GNRA	U	Myotonic Dystrophy Type 2 RNA	U	26	G	27	A	28	A	29	A	30	G	31	cWW	ntSH
248	HL_4K50_001	4K50	0.0896	0	GNRA	B	RNA (33-MER)	U	587	G	588	A	589	A	590	A	591	G	592	cWW	ntSH
249	HL_1KXK_001	1KXK	0.1297	0	GNRA	A	ai5g group II Self-splicing intron	U	33	G	34	A	35	A	36	A	37	G	38	cWW	ntSH
250	HL_4AOB_002	4AOB	0.1628	0	GNRA	A	SAM-I riboswitch	A	49	A	50	A	51	A	52	A	53	U	54	cWW	tSH
251	HL_7ZO1_001	7ZO1	0.1650	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
252	HL_7QQP_001	7QQP	0.1688	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW	ntSH
253	HL_7QR0_001	7QR0	0.1703	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW	ntSH
254	HL_6JDV_002	6JDV	0.1895	0	GNRA	B	CRISPR RNA direct repeat element	U	86	G	87	A	88	A	89	A	90	A	91	cWW	tSH
255	HL_1MFQ_002	1MFQ	0.1565	0	GNRA	A	SRP RNA	G	197	G	198	A	199	A	200	A	201	C	202	cWW	tSH
256	HL_2IL9_003	2IL9	0.1388	0	GNRA	A	Ribosomal Binding Domain of the IRES RNA	C	6119	G	6119\|\|\|A	A	6119\|\|\|B	A	6119\|\|\|C	A	6119\|\|\|D	G	6119\|\|\|E	ncWW	tSH
257	HL_3NMU_002	3NMU	0.1548	0	GNRA	E	RNA (34-MER)	C	18	G	19	A	20	A	21	A	22	G	23	cWW	ntSH
258	HL_5TPY_004	5TPY	0.1585	0	GNRA	A	RNA (71-MER)	C	13	G	14	A	15	A	16	A	17	G	18	cWW	ntSH
259	HL_8VTW_057	8VTW	0.1965	0	GNRA	1A	LSU rRNA	C	2374	G	2375	A	2376	A	2377	A	2378	G	2379	cWW	ntSH
260	HL_5DDP_001	5DDP	0.1551	0	GNRA	A	glnA	G	11	G	12	A	13	A	14	A	15	C	16	cWW	ntSH
261	HL_7D7W_001	7D7W	0.1199	0	GNRA	A	nadA RNA	C	27	G	28	A	29	A	30	A	31	G	32	cWW	ntSH
262	HL_7OZQ_004	7OZQ	0.1153	0	GNRA	H	RNA	C	14	G	15	A	16	A	17	A	18	G	19	cWW	ntSH
263	HL_3IWN_001	3IWN	0.1636	0	GNRA	A	C-di-GMP riboswitch	C	21	G	22	A	23	A	24	A	25	G	26	cWW	ntSH
264	HL_3IGI_006	3IGI	0.1045	0	GNRA	A	Group IIC intron	G	274	G	275	A	276	A	277	A	278	C	279	cWW	ntSH
265	HL_6DVK_001	6DVK	0.1003	0	GNRA	H	RNA (95-MER)	G	45	G	46	A	47	A	48	A	49	C	50	cWW	ntSH
266	HL_1GID_004	1GID	0.1055	0	GNRA	B	P4-P6 RNA RIBOZYME DOMAIN	G	149	G	150	A	151	A	152	A	153	C	154	cWW	ntSH
267	HL_1G1X_001	1G1X	0.0871	0	GNRA	D	16S RIBOSOMAL RNA	C	590	G	591	A	592	A	593	A	594	G	649	cWW	ntSH
268	HL_5TPY_006	5TPY	0.1203	0	GNRA	A	RNA (71-MER)	C	62	G	63	A	64	A	65	A	66	G	67	cWW	ntSH
269	HL_3MXH_001	3MXH	0.1288	0	GNRA	R	c-di-GMP riboswitch	C	31	G	32	A	33	A	34	A	35	G	36	cWW	ntSH
270	HL_4AOB_003	4AOB	0.1221	0	GNRA	A	SAM-I riboswitch	G	73	G	74	A	75	A	76	A	77	C	78	cWW	ntSH
271	HL_5FJC_003	5FJC	0.1257	0	GNRA	A	SAM-I riboswitch	G	73	G	74	A	75	A	76	A	77	C	78	cWW	ntSH
272	HL_7K16_001	7K16	0.1470	0	GNRA	P	RNA (51-MER)	C	13	G	14	A	15	A	16	A	17	G	18	cWW	ntSH
273	HL_4ENC_002	4ENC	0.1418	0	GNRA	A	Fluoride riboswitch	U	28	G	29	A	30	A	31	A	32	A	33	cWW	ntSH
274	HL_8G9Z_003	8G9Z	0.1421	0	GNRA related	E	Selenocysteine transfer RNA	C	47\|\|A\|C	U	47\|\|A\|D	A	47\|\|A\|E	G	47\|\|A\|F	C	47\|\|A\|G	G	47\|\|A\|H	cWW	ntSH
275	HL_5DDO_001	5DDO	0.1481	0	GNRA	A	L-glutamine riboswitch (58-MER)	G	11	G	12	A	13	A	14	A	15	C	16	cWW
276	HL_7QQP_003	7QQP	0.1202	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW	ntSH
277	HL_5J7L_179	5J7L	0.1024	0	GNRA related	DA	LSU rRNA	C	1806	G	1807	A	1808	A	1809	A	1810	G	1811	cWW	ntSH
278	HL_4BW0_001	4BW0	0.1071	0	GNRA	A	HMKT-7	C	9	G	10	A	11	A	12	A	13	G	14	cWW	ntSH
279	HL_6JQ5_004	6JQ5	0.1128	0	GNRA	B	Hatchet ribozyme	C	45	G	46	A	47	A	48	A	49	G	50	cWW	ntSH
280	HL_4FRG_002	4FRG	0.1007	0	GNRA	B	cobalamin riboswitch aptamer domain	C	46	G	47	A	48	A	49	A	50	G	51	cWW	ntSH
281	HL_1NBS_007	1NBS	0.1470	0	GNRA	B	RNase P class B	A	204	G	205	A	206	A	207	A	208	U	209	cWW	ntSH
282	HL_3V7E_003	3V7E	0.1500	0	GNRA	C	SAM-I riboswitch	G	105	G	106	A	107	A	108	A	109	C	110	cWW	ntSH
283	HL_8VTW_026	8VTW	0.2054	2	GNRA	1A	LSU rRNA	C	955	G	956	A	957	A	959	A	960	G	962	cWW	ntSH
284	HL_4WF9_027	4WF9	0.2572	2	GNRA	X	LSU rRNA	U	999	G	1000	A	1001	A	1003	A	1004	G	1006	cWW	ntSH
285	HL_7A0S_026	7A0S	0.1893	2	GNRA	X	LSU rRNA	A	966	G	967	C	968	A	970	A	971	U	973	cWW	ntSH
286	HL_6AEG_001	6AEG	0.2239	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	ncWW	ntSH
287	HL_4V9F_045	4V9F	0.2308	1	GNRA	0	LSU rRNA	C	1793	G	1794	G	1795	A	1796	A	1797	G	1799	cWW
288	HL_7KKV_003	7KKV	0.2471	1	GNRA	B	OLE* RNA	G	528	G	529	A	530	A	531	A	532	C	534	cWW
289	HL_8C3A_025	8C3A	0.1854	1	GNRA	1	LSU rRNA	G	1122	G	1123	U	1124	A	1125	A	1126	C	1128	cWW	ntSH
290	HL_5TBW_025	5TBW	0.2010	1	GNRA	1	LSU rRNA	G	1126	G	1127	U	1128	A	1129	A	1130	C	1132	cWW	ntSH
291	HL_4V9F_028	4V9F	0.1690	1	GNRA	0	LSU rRNA	G	1054	G	1055	U	1056	A	1057	A	1058	C	1060	cWW	ntSH
292	HL_6CZR_078	6CZR	0.2087	0	GNRA	1a	SSU rRNA	U	292	G	293	A	294	G	295	A	296	G	297	cWW	ntSH
293	HL_4LFB_007	4LFB	0.1823	0	GNRA	A	SSU rRNA	U	296	G	297	A	298	G	299	A	300	G	301	cWW	ntSH
294	HL_5J7L_007	5J7L	0.1612	0	GNRA	AA	SSU rRNA	U	296	G	297	A	298	G	299	A	300	G	301	cWW	ntSH
295	HL_3RG5_007	3RG5	0.1647	0	GNRA	B	Selenocysteine transfer RNA	U	47\|\|\|C	U	47\|\|\|D	A	47\|\|\|E	G	47\|\|\|F	C	47\|\|\|G	G	47\|\|\|H	cWW	ntSHa
296	HL_8C3A_047	8C3A	0.2156	1	GNRA	1	LSU rRNA	A	2142	G	2143	A	2144	A	2145	A	2146	U	2148	cWW	ntSH
297	HL_5TBW_047	5TBW	0.2321	1	GNRA	1	LSU rRNA	A	2164	G	2165	A	2166	A	2167	A	2168	U	2170	cWW	ntSH
298	HL_4LFB_022	4LFB	0.2286	0	GNRA	A	SSU rRNA	U	1012	G	1013	A	1014	A	1015	A	1016	G	1017	cWW	ntSH
299	HL_6CZR_098	6CZR	0.2555	0	GNRA	1a	SSU rRNA	C	1148	G	1149	A	1150	A	1151	A	1152	G	1153	cWW	ntSH
300	HL_5TBW_023	5TBW	0.2417	1	GNRA	1	LSU rRNA	C	1023	G	1024	A	1025	A	1026	A	1027	G	1029	cWW
301	HL_6JDV_001	6JDV	0.2313	0	GNRA	B	CRISPR RNA direct repeat element	G	48	G	49	A	50	A	51	A	52	C	53	cWW
302	HL_5VSU_001	5VSU	0.5280	0	GNRA variation	I	U6 snRNA	U	70	G	71	C	72	A	73	U	74	A	75	cWW
303	HL_4KQY_002	4KQY	0.3294	0	GNRA	A	SAM-I riboswitch	C	60	G	61	A	62	A	63	A	64	G	65	ncWW	ntSH
304	HL_5J7L_180	5J7L	0.6242	0	GNRA variation	DA	LSU rRNA	C	1868	G	1869	C	1870	A	1871	A	1872	G	1873	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAAG	75
GGAAAC	42
UGAAAA	19
AGAAAU	16
CGCAAG	16
CGAGAG	15
UGAAAG	13
CGUGAG	13
CGCGAG	6
AGUGAU	5
CGUAAG	5
GGUGAC	4
GGUAAC	4
GGAGAC	3
GGCAAC	3
GGCGAC	3
CGGGAG	3
CGGAAG	3
GGUAAGC	3
UGAGAG	3
CGACGAG	2
CGUAUAG	2
GGAAUAC	2
UGCAAG	2
GAAGCU	2
UGUGAA	2
CUAACG	2
CUAGCG	2
AGAAAGU	2
UGAUGAG	1
UGAACAG	1
UUAACAG	1
UGAAUAG	1
CGAACAG	1
CGCACAG	1
UGAACAA	1
GGAGUAC	1
AGAGAAU	1
CGCAUAG	1
UGAAGAA	1
UCAGAAG	1
GCAACUC	1
UUUCAAG	1
CGUAGG	1
AGCAAU	1
AGCGAU	1
UGUAAA	1
CGCAGG	1
UGAGAA	1
CGGCGAG	1
CUCACG	1
CCAAAG	1
AAAAAU	1
CGAUAACG	1
UGAUAAGG	1
AGCUAACU	1
CGGAACG	1
GGAAAUC	1
UUAGCG	1
CGAAAUG	1
UGCAUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAA	165
GUGA	24
GCAA	22
GAGA	22
GUAA	10
GCGA	10
GAACA	3
GAAUA	3
GGGA	3
GGAA	3
UAGC	3
GUAAG	3
GACGA	2
GUAUA	2
AAGC	2
UAAC	2
GAAAU	2
GAAAG	2
GAUGA	1
UAACA	1
GCACA	1
GAGUA	1
GAGAA	1
GCAUA	1
GAAGA	1
CAGAA	1
CAACU	1
UUCAA	1
GUAG	1
GCAG	1
GGCGA	1
UCAC	1
CAAA	1
AAAA	1
GAUAAC	1
GAUAAG	1
GCUAAC	1
GGAAC	1
GCAU	1

Release history

Release	3.87
Date	2024-08-14
Status	New id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: GNRA (293)
GNRA with GA tSW pair (4)
GNRA variation (4)
GNRA related (3)
Basepair signature: cWW-tSH-F-F
Heat map statistics: Min 0.04 | Avg 0.25 | Max 0.87

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Coloring options: Nucleotide numbers

Motif HL_85603.1 Version HL_85603.1 of this group appears in releases 3.87 to 3.87 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_85603.1 Version HL_85603.1 of this group appears in releases 3.87 to 3.87

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Csv

Json