Motif HL_87306.2 Version HL_87306.2 of this group appears in releases 4.2 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J8B_119 | 5J8B | 0.5441 | 1 | tRNA anticodon loop (H) | y | tRNA | A | 31 | PSU | 32 | G | 34 | A | 35 | A | 36 | MIA | 37 | A | 38 | PSU | 39 | cWW | ||
| 2 | HL_7PMQ_003 | 7PMQ | 0.3171 | 0 | Anticodon loop related | F | RNA (42-MER) | G | 8 | U | 9 | U | 10 | U | 11 | C | 12 | G | 13 | A | 14 | C | 15 | cWW | ||
| 3 | HL_9DE7_001 | 9DE7 | 0.0000 | 0 | GNRA with extra near cWW | A | RNA (58-MER) | C | 29 | C | 30 | G | 31 | A | 32 | A | 33 | A | 34 | A | 35 | G | 36 | cWW | ntSH | |
| 4 | HL_5UD5_002 | 5UD5 | 0.1886 | 1 | tRNA anticodon loop | C | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | ntSH |
| 5 | HL_4V9F_032 | 4V9F | 0.2179 | 1 | Anticodon loop related | 0 | LSU rRNA | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | A | 1280 | C | 1281 | U | 1282 | cWW | cWB | ntSH |
| 6 | HL_9SFQ_002 | 9SFQ | 0.3454 | 1 | T | tRNA | U | 32 | C | 33 | U | 34 | G | 35 | A | 37 | MIA | 38 | A | 39 | A | 40 | cWW | |||
| 7 | HL_6UFM_004 | 6UFM | 0.5522 | 0 | Pseudoknot geometry | B | RNA (98-MER) | G | 13 | C | 14 | C | 15 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| A(PSU)UGAA(MIA)A(PSU) | 1 |
| GUUUCGAC | 1 |
| CCGAAAAG | 1 |
| ACUCUAAAU | 1 |
| ACUCAUACU | 1 |
| UCUG(PSU)A(MIA)AA | 1 |
| GCCAUCAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| (PSU)UGAA(MIA)A | 1 |
| UUUCGA | 1 |
| CGAAAA | 1 |
| CUCUAAA | 1 |
| CUCAUAC | 1 |
| CUG(PSU)A(MIA)A | 1 |
| CCAUCA | 1 |
- Annotations
-
- Anticodon loop related (2)
- tRNA anticodon loop (H) (1)
- tRNA anticodon loop (1)
- Pseudoknot geometry (1)
- GNRA with extra near cWW (1)
- (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.19 | Avg 0.39 | Max 0.75
Coloring options: