Motif HL_88953.1 Version HL_88953.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_069 | 4WF9 | 0.7245 | 2 | X | LSU rRNA | A | 2235 | C | 2236 | U | 2237 | A | 2239 | C | 2241 | G | 2242 | U | 2243 | cWW | ncWW | |
| 2 | HL_5H9F_001 | 5H9F | 0.0000 | 1 | L | crRNA (61-MER) | G | 50 | C | 51 | G | 52 | C | 54 | A | 55 | G | 56 | C | 57 | cWW | ||
| 3 | HL_7A0S_045 | 7A0S | 0.7659 | 6 | X | LSU rRNA | G | 1767 | U | 1768 | U | 1769 | A | 1775 | A | 1776 | U | 1778 | C | 1779 | cWW | ncwW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUUAUCGU | 1 |
| GCGCCAGC | 1 |
| GUUUACCAAAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUAUCG | 1 |
| CGCCAG | 1 |
| UUUACCAAAAU | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.72 | Avg 0.52 | Max 0.85
Coloring options: