Motif HL_89199.2 Version HL_89199.2 of this group appears in releases 3.94 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8SYK_001 | 8SYK | 0.5598 | 1 | A | RNA device 43 truncation mutant 3 (U100C) | C | 22 | G | 24 | A | 25 | U | 26 | G | 27 | cWW | |
| 2 | HL_2OEU_001 | 2OEU | 0.1833 | 1 | Mini UNCG | A | Hammerhead Ribozyme | C | 15 | G | 17 | A | 18 | U | 19 | G | 20 | cWW |
| 3 | HL_2QUS_002 | 2QUS | 0.0719 | 1 | Mini UNCG | A | Hammerhead ribozyme (type III) | C | 32 | G | 34 | A | 35 | U | 36 | G | 37 | cWW |
| 4 | HL_2QUW_002 | 2QUW | 0.0000 | 1 | Mini UNCG | B | Hammerhead ribozyme, cleaved fragment | C | 32 | G | 34 | A | 35 | U | 36 | G | 37 | cWW |
| 5 | HL_5DH6_001 | 5DH6 | 0.0839 | 1 | Mini UNCG | A | Hammerhead ribozyme (type III) | C | 16 | G | 18 | A | 19 | U | 20 | G | 21 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAUG | 5 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAU | 5 |
- Annotations
-
- Mini UNCG (4)
- (1)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.24 | Max 0.57
Coloring options: