Motif HL_90542.1 Version HL_90542.1 of this group appears in releases 1.5 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4A1B_071 | 4A1B | 0.0000 | 1 | 1 | 26S RRNA | G | 3306 | A | 3307 | A | 3308 | U | 3309 | U | 3310 | C | 3312 | C | 3313 | cWW | ncWW |
| 2 | HL_4BPP_023 | 4BPP | 0.9231 | 2 | A | 18S RRNA | A | 1030 | A | 1031 | U | 1032 | A | 1034 | A | 1035 | G | 1037 | U | 1038 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAUUUCC | 1 |
| AAUAAAUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUUUC | 1 |
| AUAAAUG | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_90542.1 | Only in the parent motif |
|---|---|---|---|
| HL_66900.1 Compare | HL_4A1B_071 | HL_4BPP_023 |
Children motifs
| Child motif | Common motif instances | Only in HL_90542.1 | Only in the child motif |
|---|---|---|---|
| HL_84172.1 Compare | HL_4A1B_071 | HL_4BPP_023 | HL_1U0B_001 |
| HL_75624.1 Compare | HL_4BPP_023 | HL_4A1B_071 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-R-R
- Heat map statistics
- Min 0.92 | Avg 0.46 | Max 0.92
Coloring options: