Motif HL_92229.2 Version HL_92229.2 of this group appears in releases 3.80 to 3.87
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_8C3A_059 | 8C3A | 0.0993 | 1 | 1 | LSU rRNA | U | 2696 | U | 2697 | C | 2698 | A | 2699 | U | 2701 | G | 2702 | U | 2703 | G | 2704 | cWW | ncWW | |||
2 | HL_5TBW_058 | 5TBW | 0.0000 | 1 | 1 | LSU rRNA | U | 2724 | U | 2725 | C | 2726 | A | 2727 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | ncWW | |||
3 | HL_4WF9_039 | 4WF9 | 0.4014 | 1 | X | LSU rRNA | A | 1673 | U | 1674 | G | 1675 | A | 1676 | G | 1677 | A | 1679 | U | 1680 | U | 1681 | cWW | ntSH | cWW | tSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UUCAGUGUG | 2 |
AUGAGAAUU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UCAGUGU | 2 |
UGAGAAU | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWW-F-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.21 | Max 0.42
Coloring options: