Motif HL_92681.4 Version HL_92681.4 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3OXE_001 | 3OXE | 0.6687 | 1 | A | domain II of glycine riboswitch | G | 17 | U | 19 | U | 20 | A | 21 | A | 22 | U | 23 | C | 24 | cWW | |
| 2 | HL_5TBW_062 | 5TBW | 0.5230 | 1 | 1 | LSU rRNA | A | 2897 | C | 2899 | A | 2900 | G | 2901 | A | 2902 | A | 2903 | U | 2904 | cWW | |
| 3 | HL_7A0S_060 | 7A0S | 0.1864 | 1 | X | LSU rRNA | U | 2507 | A | 2509 | A | 2510 | G | 2511 | A | 2512 | A | 2513 | G | 2514 | cWW | |
| 4 | HL_4V9F_063 | 4V9F | 0.1808 | 1 | 0 | LSU rRNA | U | 2563 | C | 2565 | A | 2566 | G | 2567 | A | 2568 | A | 2569 | G | 2570 | cWW | |
| 5 | HL_4Y4O_164 | 4Y4O | 0.0000 | 1 | 2A | LSU rRNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | A | 2533 | A | 2534 | G | 2535 | cWW | |
| 6 | HL_5J7L_194 | 5J7L | 0.1222 | 1 | DA | LSU rRNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | U | 2533 | A | 2534 | G | 2535 | cWW | |
| 7 | HL_4WF9_057 | 4WF9 | 0.1838 | 1 | X | LSU rRNA | U | 2555 | U | 2557 | A | 2558 | G | 2559 | U | 2560 | C | 2561 | G | 2562 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGAAG | 2 |
| GUUUAAUC | 1 |
| AGCAGAAU | 1 |
| UGCAGAAG | 1 |
| UGAAGUAG | 1 |
| UGUAGUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAGAA | 2 |
| GAAGAA | 2 |
| UUUAAU | 1 |
| GAAGUA | 1 |
| GUAGUC | 1 |
Coloring options: