Motif HL_92935.1 Version HL_92935.1 of this group appears in releases 4.0 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4LFB_026 | 4LFB | 0.4942 | 2 | A | SSU rRNA | G | 1134 | U | 1135 | C | 1137 | G | 1138 | C | 1140 | cWW | tSW |
| 2 | HL_4WF9_024 | 4WF9 | 0.2024 | 2 | X | LSU rRNA | A | 824 | G | 825 | A | 827 | A | 828 | U | 830 | cWW | tSW |
| 3 | HL_8B0X_054 | 8B0X | 0.0861 | 2 | a | LSU rRNA | U | 781 | G | 782 | A | 784 | A | 785 | G | 787 | cWW | tSW |
| 4 | HL_4V9F_025 | 4V9F | 0.0918 | 2 | 0 | LSU rRNA | U | 872 | G | 873 | A | 875 | A | 876 | G | 878 | cWW | tSW |
| 5 | HL_9DFE_022 | 9DFE | 0.0000 | 2 | 1A | LSU rRNA | U | 779 | G | 780 | A | 782 | A | 783 | G | 785 | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAGG | 2 |
| GUUCGGC | 1 |
| AGAAAUU | 1 |
| UGAAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAG | 2 |
| UUCGG | 1 |
| GAAAU | 1 |
| GAAAA | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-tSW-F
- Heat map statistics
- Min 0.08 | Avg 0.24 | Max 0.58
Coloring options: