Motif HL_93616.1 Version HL_93616.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 7-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZUE_001 | 2ZUE | 0.3242 | 4 | tRNA D-loop | B | tRNA-Arg | U | 913 | A | 914 | G | 915 | C | 916 | C | 917 | A | 917|||A | A | 921 | G | 922 | cWW | cWS | |
| 2 | HL_1J1U_001 | 1J1U | 0.2450 | 3 | tRNA D-loop | B | tRNA(Tyr) | C | 513 | A | 514 | G | 515 | C | 516 | C | 517 | U | 518 | A | 522 | G | 523 | cWW | ncWS | |
| 3 | HL_4TUE_033 | 4TUE | 0.2540 | 3 | tRNA D-loop | QV | tRNA | C | 12 | A | 13 | G | 14 | C | 15 | C | 16 | U | 17 | A | 21 | G | 22 | cWW | cWS | |
| 4 | HL_5E81_211 | 5E81 | 0.0000 | 3 | tRNA D-loop | 2K | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | C | 18 | A | 22 | G | 23 | cWW | cWS | |
| 5 | HL_6CFJ_106 | 6CFJ | 0.1491 | 3 | tRNA D-loop | 1x | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | cWS | |
| 6 | HL_4V9Q_213 | 4V9Q | 0.2382 | 3 | tRNA D-loop | DV | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | ncSH | |
| 7 | HL_4WT8_215 | 4WT8 | 0.3706 | 3 | tRNA D-loop | D4 | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 18 | A | 22 | G | 23 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCUGGUAG | 5 |
| UAGCCAGGACAG | 1 |
| CAGCCCGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCCUGGUA | 5 |
| AGCCAGGACA | 1 |
| AGCCCGGUA | 1 |
- Annotations
-
- tRNA D-loop (7)
- Basepair signature
- cWW-cWS-F-F-F-F
- Heat map statistics
- Min 0.15 | Avg 0.27 | Max 0.46
Coloring options: