Motif HL_94376.3 Version HL_94376.3 of this group appears in releases 4.1 to 4.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 3-4 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4QK9_003 | 4QK9 | 0.7127 | 1 | A | cyclic di-AMP riboswitch | U | 72 | A | 73 | U | 75 | C | 76 | U | 77 | C | 78 | U | 79 | U | 80 | U | 81 | C | 82 | G | 83 | cWW | cSH | |
| 2 | HL_1ZCI_001 | 1ZCI | 0.0000 | 0 | Pseudoknot geometry | A | RNA (23-mer) | G | 7 | A | 8 | A | 9 | G | 10 | U | 11 | G | 12 | C | 13 | A | 14 | C | 15 | A | 16 | C | 17 | cWW | |
| 3 | HL_1ZCI_002 | 1ZCI | 0.0658 | 0 | Pseudoknot geometry | B | RNA (23-mer) | G | 7 | A | 8 | A | 9 | G | 10 | U | 11 | G | 12 | C | 13 | A | 14 | C | 15 | A | 16 | C | 17 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGUGCACAC | 2 |
| UAGUCUCUUUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGUGCACA | 2 |
| AGUCUCUUUC | 1 |
Release history
| Release | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 | 4.8 | 4.9 | 4.10 | 4.11 | 4.12 | 4.13 | 4.14 | 4.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 | 2026-03-25 | 2026-04-22 | 2026-05-20 | 2026-06-17 | 2026-07-15 | 2026-08-12 | 2026-09-09 | 2026-10-07 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (2)
- (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.33 | Max 0.72
Coloring options: