Motif HL_97756.4 Version HL_97756.4 of this group appears in releases 4.7 to 4.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-3 | 1-14 | 4-14 | 5-10 | 6-12 | 7-11 | 10-13 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_070 | 4WF9 | 0.1729 | 1 | Y | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | A | 37 | U | 38 | C | 40 | C | 41 | G | 42 | A | 43 | A | 44 | C | 45 | A | 46 | cWW | ncWS | cWW | cSW | ntSW | ||
| 2 | HL_9E6Q_068 | 9E6Q | 0.1011 | 0 | 2 | 5S rRNA | G | 38 | U | 39 | C | 40 | U | 41 | C | 42 | A | 43 | U | 44 | C | 45 | A | 46 | G | 47 | A | 48 | A | 49 | C | 50 | C | 51 | cWW | ncWS | cWW | cSW | tSH | tSW | |
| 3 | HL_9H3G_073 | 9H3G | 0.1240 | 0 | C3 | 5S rRNA | A | 32 | U | 33 | C | 34 | C | 35 | C | 36 | A | 37 | U | 38 | C | 39 | A | 40 | G | 41 | A | 42 | A | 43 | C | 44 | U | 45 | ncSH | cWW | cWS | cWW | cSW | tSH | tSW |
| 4 | HL_9DFE_067 | 9DFE | 0.0865 | 1 | 1B | 5S rRNA | U | 34 | U | 35 | C | 36 | C | 37 | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | A | 45 | A | 46 | C | 47 | A | 48 | ncSH | cWW | cWS | cWW | cSW | tSW | |
| 5 | HL_4V9F_074 | 4V9F | 0.0000 | 1 | 9 | 5S rRNA | U | 33 | A | 34 | C | 35 | C | 36 | C | 37 | A | 38 | U | 39 | C | 41 | C | 42 | G | 43 | A | 44 | A | 45 | C | 46 | A | 47 | cSH | cWW | cWS | cWW | cSW | tSW | |
| 6 | HL_5NS3_003 | 5NS3 | 0.0962 | 1 | C | double-stranded RNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | cSW | tSW | |
| 7 | HL_8B0X_102 | 8B0X | 0.1665 | 1 | b | 5S rRNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | cSW | tSW | |
| 8 | HL_1MJI_004 | 1MJI | 0.5594 | 1 | D | 5S rRNA fragment | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | cSW | ntSH | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACCCCAUGCCGAACU | 3 |
| UUCCCAUGCCGAACA | 1 |
| GUCUCAUCAGAACC | 1 |
| AUCCCAUCAGAACU | 1 |
| UUCCCAUUCCGAACA | 1 |
| UACCCAUCCCGAACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCCCAUGCCGAAC | 3 |
| UCCCAUGCCGAAC | 1 |
| UCUCAUCAGAAC | 1 |
| UCCCAUCAGAAC | 1 |
| UCCCAUUCCGAAC | 1 |
| ACCCAUCCCGAAC | 1 |
- Annotations
-
- (8)
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.23 | Max 0.63
Coloring options: