Motif HL_97896.2 Version HL_97896.2 of this group appears in releases 3.80 to 3.87
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_8C3A_203 | 8C3A | 0.2532 | 4 | CM | SSU rRNA | C | 448 | G | 449 | G | 454 | cWW | |
2 | HL_4V88_204 | 4V88 | 0.0000 | 4 | A6 | SSU rRNA | C | 777 | G | 778 | G | 783 | cWW | |
3 | HL_7KI3_001 | 7KI3 | 0.1147 | 3 | C | HCV genotype 1a miR-122 site-1 | C | 10 | U | 11 | G | 15 | cWW | |
4 | HL_7MSF_001 | 7MSF | 0.3952 | 3 | R | RNA (14-mer) | C | 5||||P_1 | A | 6||||P_1 | G | 10||||P_1 | cWW | |
5 | HL_2IZN_001 | 2IZN | 0.3903 | 3 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 13||||P_1 | cWW | |
6 | HL_5MSF_001 | 5MSF | 0.4011 | 3 | R | RNA (18-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 12||||P_1 | cWW | |
7 | HL_1U1Y_001 | 1U1Y | 0.4108 | 3 | R | RNA (17-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 12||||P_1 | cWW | |
8 | HL_5CCB_001 | 5CCB | 0.3491 | 7 | N | tRNA | C | 13 | A | 14 | G | 22 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAUCAC | 2 |
CGACACG | 1 |
CGUAUUG | 1 |
CUGAUG | 1 |
CAACAG | 1 |
GAUUAC | 1 |
CAGUCGGUAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AUCA | 2 |
GACAC | 1 |
GUAUU | 1 |
UGAU | 1 |
AACA | 1 |
AUUA | 1 |
AGUCGGUA | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.Coloring options: