#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_8C3A_2038C3A0.25324 CM SSU rRNAC448G449G454cWW
2 HL_4V88_2044V880.00004 A6 SSU rRNAC777G778G783cWW
3 HL_7KI3_0017KI30.11473 CHCV genotype 1a miR-122 site-1C10U11G15cWW
4 HL_7MSF_0017MSF0.39523 RRNA (14-mer)C5||||P_1A6||||P_1G10||||P_1cWW
5 HL_2IZN_0012IZN0.39033 RRNA (19-mer)G8||||P_1A9||||P_1C13||||P_1cWW
6 HL_5MSF_0015MSF0.40113 RRNA (18-mer)G7||||P_1A8||||P_1C12||||P_1cWW
7 HL_1U1Y_0011U1Y0.41083 RRNA (17-mer)G7||||P_1A8||||P_1C12||||P_1cWW
8 HL_5CCB_0015CCB0.34917 N tRNAC13A14G22cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUCAC2
CGACACG1
CGUAUUG1
CUGAUG1
CAACAG1
GAUUAC1
CAGUCGGUAG1
Non-Watson-Crick part of the motif
SequenceCounts
AUCA2
GACAC1
GUAUU1
UGAU1
AACA1
AUUA1
AGUCGGUA1

Release history

Release3.803.813.823.833.843.853.863.87
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-14
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
Basepair signature
cWW-F
Heat map statistics
Min 0.08 | Avg 0.19 | Max 0.41
Help

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.5058 s