Motif HL_98557.2 Version HL_98557.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2Y9H_003 | 2Y9H | 0.2996 | 3 | F | RNA (19-mer) | C | 11 | G | 12 | G | 16 | cWW | |
| 2 | HL_5TBW_006 | 5TBW | 0.1249 | 2 | 1 | LSU rRNA | C | 208 | A | 209 | G | 212 | cWW | |
| 3 | HL_4V8P_089 | 4V8P | 0.0955 | 2 | D1 | LSU rRNA | C | 208 | A | 209 | G | 212 | cWW | |
| 4 | HL_4Y4O_113 | 4Y4O | 0.0000 | 2 | 2A | LSU rRNA | C | 319 | A | 320 | G | 323 | cWW | |
| 5 | HL_4WF9_011 | 4WF9 | 0.1445 | 2 | X | LSU rRNA | C | 362 | A | 363 | G | 366 | cWW | |
| 6 | HL_4IOA_010 | 4IOA | 0.2127 | 2 | X | LSU rRNA | C | 330 | U | 331 | G | 334 | cWW | |
| 7 | HL_4V9F_011 | 4V9F | 0.2482 | 2 | 0 | LSU rRNA | G | 326 | A | 327 | C | 330 | cWW | |
| 8 | HL_5J7L_143 | 5J7L | 0.3220 | 2 | DA | LSU rRNA | G | 319 | A | 320 | C | 323 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAAG | 2 |
| GAUAC | 2 |
| CGCGUG | 1 |
| CAUAG | 1 |
| CAGAG | 1 |
| CUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA | 3 |
| AAA | 2 |
| GCGU | 1 |
| AGA | 1 |
| UCA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: