Motif HL_98557.4 Version HL_98557.4 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2Y9H_003 | 2Y9H | 0.2996 | 3 | F | RNA (19-mer) | C | 11 | G | 12 | G | 16 | cWW | |
| 2 | HL_5TBW_006 | 5TBW | 0.1249 | 2 | 1 | LSU rRNA | C | 208 | A | 209 | G | 212 | cWW | |
| 3 | HL_4Y4O_113 | 4Y4O | 0.0000 | 2 | 2A | LSU rRNA | C | 319 | A | 320 | G | 323 | cWW | |
| 4 | HL_4WF9_011 | 4WF9 | 0.1445 | 2 | X | LSU rRNA | C | 362 | A | 363 | G | 366 | cWW | |
| 5 | HL_7A0S_011 | 7A0S | 0.2372 | 2 | X | LSU rRNA | C | 330 | U | 331 | G | 334 | cWW | |
| 6 | HL_4V9F_011 | 4V9F | 0.2482 | 2 | 0 | LSU rRNA | G | 326 | A | 327 | C | 330 | cWW | |
| 7 | HL_5J7L_143 | 5J7L | 0.3220 | 2 | DA | LSU rRNA | G | 319 | A | 320 | C | 323 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAC | 2 |
| CGCGUG | 1 |
| CAUAG | 1 |
| CAGAG | 1 |
| CAAAG | 1 |
| CUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA | 3 |
| GCGU | 1 |
| AGA | 1 |
| AAA | 1 |
| UCA | 1 |
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