Motif HL_98995.3 Version HL_98995.3 of this group appears in releases 3.12 to 3.21
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4IOA_036 | 4IOA | 0.7710 | 1 | X | LSU rRNA | G | 1508 | A | 1509 | A | 1510 | A | 1511 | A | 1512 | C | 1514 | cWW | |
| 2 | HL_4PQV_002 | 4PQV | 0.4116 | 1 | A | Flavivirus 3' UTR stem loop IV | C | 28 | G | 29 | C | 30 | C | 31 | G | 32 | G | 34 | cWW | |
| 3 | HL_4IOA_064 | 4IOA | 0.0000 | 0 | X | LSU rRNA | U | 2680 | A | 2681 | C | 2682 | C | 2683 | A | 2684 | A | 2685 | cWW | |
| 4 | HL_5J7L_198 | 5J7L | 0.1231 | 0 | Ribsomal LSU H95 | DA | LSU rRNA | U | 2701 | G | 2702 | C | 2703 | C | 2704 | A | 2705 | A | 2706 | cWW |
| 5 | HL_4WF9_061 | 4WF9 | 0.1819 | 0 | Ribsomal LSU H95 | X | LSU rRNA | U | 2728 | G | 2729 | C | 2730 | C | 2731 | A | 2732 | A | 2733 | cWW |
| 6 | HL_4V9F_067 | 4V9F | 0.2528 | 0 | Ribsomal LSU H95 | 0 | LSU rRNA | C | 2737 | G | 2738 | A | 2739 | G | 2740 | A | 2741 | G | 2742 | cWW |
| 7 | HL_5TBW_066 | 5TBW | 0.2490 | 0 | Ribsomal LSU H95 | 1 | LSU rRNA | U | 3068 | G | 3069 | A | 3070 | U | 3071 | C | 3072 | A | 3073 | cWW |
| 8 | HL_1U6B_002 | 1U6B | 0.5563 | 0 | B | 197-MER | C | 70 | G | 71 | C | 72 | C | 73 | C | 74 | G | 75 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCCAA | 2 |
| GAAAAUC | 1 |
| CGCCGAG | 1 |
| UACCAA | 1 |
| CGAGAG | 1 |
| UGAUCA | 1 |
| CGCCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCCA | 2 |
| AAAAU | 1 |
| GCCGA | 1 |
| ACCA | 1 |
| GAGA | 1 |
| GAUC | 1 |
| GCCC | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Ribsomal LSU H95 (4)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.42 | Max 0.84
Coloring options: