Motif HL_99402.1 Version HL_99402.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 5-6 | 5-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4Y4O_103 | 4Y4O | 0.2972 | 0 | 2A | LSU rRNA | U | 59 | G | 60 | G | 61 | C | 62 | U | 63 | A | 64 | C | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH | ncSH | |
| 2 | HL_4IOA_001 | 4IOA | 0.3097 | 0 | Pseudoknot with intercalation (H) | X | LSU rRNA | C | 58 | G | 59 | A | 60 | U | 61 | U | 62 | A | 63 | C | 64 | C | 65 | U | 66 | G | 67 | cWW | cSH | |
| 3 | HL_4V9F_001 | 4V9F | 0.2633 | 0 | Pseudoknot with intercalation | 0 | LSU rRNA | U | 55 | G | 56 | C | 57 | C | 58 | A | 59 | A | 60 | G | 61 | C | 62 | U | 63 | G | 64 | cWW | cSH | |
| 4 | HL_4V8P_078 | 4V8P | 0.0000 | 0 | C2 | 5.8S rRNA | C | 50 | A | 51 | G | 52 | C | 53 | G | 54 | A | 55 | A | 56 | A | 57 | U | 58 | G | 59 | cWW | |||
| 5 | HL_2XDB_001 | 2XDB | 0.6637 | 0 | Pseudoknot with intercalation | G | TOXI | U | 4 | G | 5 | A | 6 | U | 7 | U | 8 | U | 9 | G | 10 | C | 11 | U | 12 | A | 13 | cWW | ncSH | |
| 6 | HL_2XD0_006 | 2XD0 | 0.6808 | 0 | Pseudoknot with intercalation | W | TOXI | U | 4 | G | 5 | A | 6 | U | 7 | U | 8 | U | 9 | G | 10 | C | 11 | U | 12 | A | 13 | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUUUGCUA | 2 |
| UGGCUACCUG | 1 |
| CGAUUACCUG | 1 |
| UGCCAAGCUG | 1 |
| CAGCGAAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUUUGCU | 2 |
| GGCUACCU | 1 |
| GAUUACCU | 1 |
| GCCAAGCU | 1 |
| AGCGAAAU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot with intercalation (3)
- (2)
- Pseudoknot with intercalation (H) (1)
- Basepair signature
- cWW-R-R-cSH-cSH-R-R
- Heat map statistics
- Min 0.12 | Avg 0.43 | Max 0.80
Coloring options: