Motif IL_00086.1 Version IL_00086.1 of this group appears in releases 4.0 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9AXU_120 | 9AXU | 0.1093 | 1 | 2 | LSU rRNA | U | 3474 | U | 3475 | A | 3476 | A | 3477 | C | 3479 | * | G | 3429 | U | 3430 | A | 3431 | cWW | cwW | cWW | |
| 2 | IL_8OI5_129 | 8OI5 | 0.0000 | 1 | 1 | LSU rRNA | U | 3338 | U | 3339 | A | 3340 | A | 3341 | C | 3343 | * | G | 3293 | U | 3294 | A | 3295 | cWW | cwW | cWW | |
| 3 | IL_8P9A_359 | 8P9A | 0.0870 | 1 | Isolated non-canonical cWW pair (H) | AR | LSU rRNA | U | 3373 | U | 3374 | A | 3375 | A | 3376 | C | 3378 | * | G | 3328 | U | 3329 | A | 3330 | cWW | cwW | cWW |
| 4 | IL_8GLP_175 | 8GLP | 0.3421 | 1 | Isolated non-canonical cWW pair (H) | L5 | LSU rRNA | G | 5045 | U | 5046 | C | 5047 | A | 5048 | C | 5050 | * | G | 5000 | PSU | 5001 | U | 5002 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAGC*GUA | 3 |
| GUCAGC*G(PSU)U | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAG*U | 3 |
| UCAG*(PSU) | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (H) (2)
- (2)
- Basepair signature
- cWW-cWW-L-cWW-L
- Heat map statistics
- Min 0.09 | Avg 0.17 | Max 0.37
Coloring options: