Motif IL_02060.4 Version IL_02060.4 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_088 | 7A0S | 0.1556 | 0 | Major groove platform | X | LSU rRNA | C | 2486 | G | 2487 | * | U | 2559 | G | 2560 | G | 2561 | cWW | cWW | chH |
| 2 | IL_4WF9_094 | 4WF9 | 0.0698 | 0 | Major groove platform | X | LSU rRNA | C | 2534 | G | 2535 | * | U | 2607 | G | 2608 | G | 2609 | cWW | cWW | chH |
| 3 | IL_7RQB_096 | 7RQB | 0.0000 | 0 | Major groove platform | 1A | LSU rRNA | C | 2507 | G | 2508 | * | U | 2580 | G | 2581 | G | 2582 | cWW | cWW | chH |
| 4 | IL_4V9F_086 | 4V9F | 0.0639 | 0 | Major groove platform | 0 | LSU rRNA | C | 2542 | G | 2543 | * | U | 2615 | G | 2616 | G | 2617 | cWW | cWW | nchH |
| 5 | IL_4WF9_106 | 4WF9 | 0.5453 | 0 | Major groove intercalation | X | LSU rRNA | G | 2858 | G | 2859 | * | U | 2898 | A | 2899 | C | 2900 | cWW | cWW | |
| 6 | IL_6JQ5_004 | 6JQ5 | 0.9052 | 0 | B | RNA (82-MER) | G | 31 | G | 32 | * | U | 62 | G | 63||A | C | 64 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGG | 4 |
| GG*UAC | 1 |
| GG*UGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 5 |
| *A | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform (4)
- Major groove intercalation (1)
- (1)
- Basepair signature
- cWW-cHH-cWW
- Heat map statistics
- Min 0.06 | Avg 0.39 | Max 0.92
Coloring options: