Motif IL_02284.2 Version IL_02284.2 of this group appears in releases 3.48 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4M4O_004 | 4M4O | 0.6845 | 0 | B | RNA (59-MER) | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW | |
| 2 | IL_4M6D_013 | 4M6D | 0.6476 | 0 | H | aptamer | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW | |
| 3 | IL_4WF9_107 | 4WF9 | 0.0000 | 1 | Decoding loop related (H) | X | LSU rRNA | G | 2863 | A | 2864 | G | 2865 | * | U | 2891 | G | 2892 | C | 2894 | cWW | cWW |
| 4 | IL_5J7L_065 | 5J7L | 0.5059 | 1 | AA | SSU rRNA | G | 1455 | A | 1456 | G | 1457 | * | U | 1445 | A | 1447 | C | 1448 | cWW | cWW | |
| 5 | IL_4V9F_015 | 4V9F | 0.6849 | 3 | 0 | LSU rRNA | C | 606 | G | 607 | A | 608 | * | U | 548 | A | 552 | G | 553 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAG*CAC | 2 |
| GAG*UGAC | 1 |
| GAG*UAAC | 1 |
| CGA*UACAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*A | 2 |
| A*GA | 1 |
| A*AA | 1 |
| G*ACAA | 1 |
Release history
| Release | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Decoding loop related (H) (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.53 | Max 0.92
Coloring options: