IL_02315.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-5	2-4	2-5	3-4
1	IL_3T4B_001	3T4B	0.6204	1		A	HCV IRES pseudoknot domain plus crystallization module	U	287	A	288	C	289	*	G	135	G	137	cWW			cWW
2	IL_1ZX7_005	1ZX7	0.6158	2	Decoding loop related	F+E	RNA (14-mer)	C	26	A	27	C	28	*	G	7	G	10	cWW			cWW
3	IL_1ZX7_003	1ZX7	0.6716	2	Decoding loop related	D+C	RNA (14-mer)	C	26	A	27	C	28	*	G	7	G	10	cWW			cWW
4	IL_2OIY_002	2OIY	0.6812	2		A+B	RNA (23-mer)	C	15	A	16	C	17	*	G	7	G	10	cWW			cWW
5	IL_2OIY_001	2OIY	0.6589	2		B+A	RNA (23-mer)	C	15	A	16	C	17	*	G	7	G	10	cWW			cWW
6	IL_2F4S_003	2F4S	0.6148	2		B+A	RNA (21-mer)	C	1407	A	1408	C	1409	*	G	1491	G	1494	cWW			cWW
7	IL_3J9W_112	3J9W	0.3856	1	Intercalated cWW (H)	BA	LSU rRNA	G	1268	A	1269	C	1270	*	G	1259	C	1261	cWW			cWW
8	IL_2F4S_001	2F4S	0.3988	1		B+A	RNA (21-mer)	G	1494	U	1495	C	1496	*	G	1405	C	1407	cWW			cWW
9	IL_1O9M_001	1O9M	0.4459	1		B+A	EUBACTERIAL A-SITE	G	1494	U	1495	C	1496	*	G	1405	C	1407	cWW			cWW
10	IL_4IOA_046	4IOA	0.5894	1	Intercalated cWW (H)	X	LSU rRNA	G	1241	A	1242	G	1243	*	U	1232	C	1234	cWW			cWW
11	IL_5AJ0_045	5AJ0	0.5367	0		A2	LSU rRNA	U	741	G	742	G	743	*	U	898	G	899	cWW	ncWWa		cWW
12	IL_3J7P_041	3J7P	0.5001	0		5	LSU rRNA	C	1197	G	1198	G	1199	*	C	1097	G	1098	cWW	ncWW
13	IL_5AJ0_126	5AJ0	0.3534	0		A2	LSU rRNA	U	3739	C	3740	U	3741	*	G	3726	A	3727	ncWW			cWW
14	IL_5AJ0_012	5AJ0	0.3726	0		A2	LSU rRNA	C	165	G	166	C	167	*	G	261	G	262	cWW
15	IL_5A2Q_020	5A2Q	0.4352	0		2	SSU rRNA	C	317	A	318	C	319	*	G	332	G	333	cWW			cWW
16	IL_5AJ0_059	5AJ0	0.3472	0		A2	LSU rRNA	C	1456	G	1457	C	1458	*	G	1471	G	1472	cWW			cWW
17	IL_4V88_250	4V88	0.3924	0	Single stack bend (H)	A5	LSU rRNA	C	163	A	164	A	165	*	U	257	G	258	cWW			cWW
18	IL_5J7L_266	5J7L	0.3603	0	Single stack bend	DA	LSU rRNA	G	940	A	941	G	942	*	C	837	C	838	cWW			ncWW
19	IL_5FDU_024	5FDU	0.3548	0	Single stack bend (H)	1A	LSU rRNA	G	985	A	986	G	987	*	C	884	C	885	cWW			cWW
20	IL_4IOA_021	4IOA	0.3837	0	Single stack bend (H)	X	LSU rRNA	G	951	A	952	G	953	*	C	850	C	851	cWW			cWW
21	IL_3J9W_089	3J9W	0.3799	0	Single stack bend (H)	BA	LSU rRNA	G	986	A	987	G	988	*	C	884	C	885	cWW			cWW
22	IL_5AJ0_004	5AJ0	0.3181	0		A2	LSU rRNA	G	55	A	56	G	57	*	C	26	C	27	cWW			cWW
23	IL_3J79_002	3J79	0.2622	0		A	LSU rRNA	G	56	A	57	A	58	*	U	27	C	28	cWW			cWW
24	IL_4V91_004	4V91	0.2977	0	Single stack bend (H)	1	LSU rRNA	G	56	A	57	G	58	*	C	27	C	28	cWW			cWW
25	IL_4V88_245	4V88	0.3006	0	Single stack bend (H)	A5	LSU rRNA	G	56	A	57	G	58	*	C	27	C	28	cWW			cWW
26	IL_4V8P_303	4V8P	0.3156	0	Single stack bend (H)	F1	LSU rRNA	G	54	A	55	G	56	*	C	25	C	26	cWW			cWW
27	IL_4IOA_005	4IOA	0.2417	0	Single stack bend (H)	X	LSU rRNA	A	189	A	190	G	191	*	C	160	U	161	cWW			cWW
28	IL_5FDU_005	5FDU	0.1954	0	Single stack bend (H)	1A	LSU rRNA	G	201	A	202	G	203	*	C	172	C	173	cWW			cWW
29	IL_5J7L_249	5J7L	0.2537	0	Single stack bend	DA	LSU rRNA	G	212	A	213	G	214	*	C	183	C	184	cWW			cWW
30	IL_3JCS_093	3JCS	0.2588	0		2	LSU rRNA	G	744	G	745	A	746	*	U	692	C	693	cWW			ncWW
31	IL_5A2Q_038	5A2Q	0.3589	0		2	SSU rRNA	U	747	C	748	U	749	*	A	794	A	795	cWW			cWW
32	IL_4V88_278	4V88	0.4585	0	Single stack bend (H)	A5	LSU rRNA	U	1111	A	1112	G	1113	*	C	969	A	970	cWW			cWW
33	IL_4V8P_344	4V8P	0.4284	0	Single stack bend (H)	F1	LSU rRNA	U	1138	A	1139	G	1140	*	C	994	A	995	cWW			cWW
34	IL_4V19_044	4V19	0.3389	0		A	LSU rRNA	C	1319	C	1320	U	1321	*	A	1274	G	1275	cWW			cWW
35	IL_4IOA_085	4IOA	0.3502	0		X	LSU rRNA	C	2477	C	2478	U	2479	*	A	2432	G	2433	cWW			cWW
36	IL_5FDU_093	5FDU	0.3994	0	Single stack bend (H)	1A	LSU rRNA	C	2510	C	2511	U	2512	*	A	2465	G	2466	cWW			cWW
37	IL_5A2Q_100	5A2Q	0.3345	0		3	IRES	C	242	A	243	A	244	*	U	149	G	150	cWW			cWW
38	IL_4V91_087	4V91	0.3356	0	Single stack bend (H)	1	LSU rRNA	C	1951	G	1952	G	1953	*	C	2094	G	2095	ncWW			ncWW
39	IL_5G2X_001	5G2X	0.3685	0		A	Group II catalytic intron	C	8	A	9	G	10	*	U	388	G	389	ncWW			ncWW
40	IL_3J79_036	3J79	0.2956	0	Single stack bend (H)	A	LSU rRNA	A	1239	A	1240	G	1241	*	C	1088	U	1089	cWW			cWW
41	IL_4V9F_005	4V9F	0.2510	0	Single stack bend	0	LSU rRNA	G	182	A	183	G	184	*	C	153	C	154	cWW			cWW
42	IL_5IBB_342	5IBB	0.2574	0		3L	tRNA	G	42	G	43	G	44	*	C	27	C	28	cWW			cWW
43	IL_4V4Q_224	4V4Q	0.1717	0	Single stack bend (H)	CA	SSU rRNA	G	1041	A	1042	G	1043	*	C	998	C	999	cWW			cWW
44	IL_4V9F_081	4V9F	0.0000	0	Single stack bend	0	LSU rRNA	U	2436	A	2437	G	2438	*	C	2454	A	2455	cWW			cWW
45	IL_4IOA_056	4IOA	0.1885	0	Single stack bend (H)	X	LSU rRNA	A	1463	A	1464	G	1465	*	C	1477	U	1478	cWW	ncWW		cWW
46	IL_5AJ0_169	5AJ0	0.2142	0		A2	LSU rRNA	C	4709	U	4710	C	4711	*	G	4909	G	4910	cWW			cWW
47	IL_5AJ0_009	5AJ0	0.2311	0		A2	LSU rRNA	G	127	C	128	C	129	*	G	139	C	140	cWW			cWW
48	IL_3J7R_242	3J7R	0.3812	0		S5	tRNA	C	4	G	5	G	6	*	C	68	G	69	ncWW	cWW		ncWW
49	IL_3J7P_009	3J7P	0.2859	0		5	LSU rRNA	C	274	C	275	C	276	*	G	160	G	161	ncWW			cWW
50	IL_3J7P_175	3J7P	0.3012	0		S2	SSU rRNA	G	413	A	414	A	415	*	U	423	C	424	cWW			cWW
51	IL_3J7P_182	3J7P	0.3036	0		S2	SSU rRNA	C	639	A	640	A	641	*	U	596	G	597	cWW			cWW
52	IL_1FJG_046	1FJG	0.4085	0		A	SSU rRNA	G	1143	G	1144	C	1145	*	G	1127	C	1128	cWW			ncWW
53	IL_5AJ0_025	5AJ0	0.3972	0		A2	LSU rRNA	C	671	G	672	C	673	*	G	469	G	470	cWW	ncWw		ncWW
54	IL_4V4Q_201	4V4Q	0.3581	0		CA	SSU rRNA	C	477	A	478	U	479	*	G	454	G	455	cWW			cWW
55	IL_2XXA_013	2XXA	0.4102	0		G	SSRP RNA	G	68	A	69	U	70	*	G	28	C	29	cWW			cWW
56	IL_5AJ0_145	5AJ0	0.3217	1		A2	LSU rRNA	G	4309	A	4310	C	4312	*	G	4326	C	4327	cWW			cWW
57	IL_5J7L_269	5J7L	0.2683	0	Single stack bend	DA	LSU rRNA	G	926	A	927	A	928	*	U	850	C	851	cWW			cWW
58	IL_3J7R_243	3J7R	0.3692	0		S6	tRNA	G	10	C	11	C	12	*	G	24	C	25	ncWW			cWW
59	IL_4GMA_001	4GMA	0.3036	0		Z	Cobalamin riboswitch	A	7	G	8	C	9	*	G	176	U	177	ncWW			cWW
60	IL_4V91_110	4V91	0.3700	1	Single stack bend (H)	1	LSU rRNA	G	2770	U	2771	C	2773	*	G	2787	C	2788	ncWW		ncWW	cWW
61	IL_4UYK_002	4UYK	0.4141	0	Not an internal loop	R	SRP RNA	G	78	C	79	G	80	*	C	121	C	122			ncwW	cWW
62	IL_5FDU_059	5FDU	0.5313	0	Single stack bend (H)	1A	LSU rRNA	G	1495	A	1496	G	1497	*	C	1509	C	1510	cWW			cWW
63	IL_5A2Q_012	5A2Q	0.5014	0		2	SSU rRNA	A	339	C	340	C	341	*	G	123	U	124	cWW			cWW
64	IL_3J7P_166	3J7P	0.3928	0		S2	SSU rRNA	A	339	C	340	C	341	*	G	123	U	124	cWW			cWW
65	IL_4V8P_320	4V8P	0.5079	0		F1	LSU rRNA	U	466	A	467	A	468	*	U	511	G	512	cWW			cWW
66	IL_5IBB_340	5IBB	0.4134	0	Single base bend	1L	tRNA	G	63	U	64	C	65	*	G	50	C	51	cWW			cWW
67	IL_3J7P_032	3J7P	0.3520	0		5	LSU rRNA	G	735	C	736	C	737	*	G	927	C	928	cWW			cWW
68	IL_5AN9_032	5AN9	0.3135	0		N	LSU rRNA	A	3102	U	3103	G	3104	*	C	3121	U	3122	cWW	ncWW		cWW
69	IL_4C7O_002	4C7O	0.4691	0	Single stack bend	E	SRP RNA	A	36	U	37	G	38	*	C	8	U	9	cWW			cWW
70	IL_4V91_076	4V91	0.3653	0	Single stack bend (H)	1	LSU rRNA	G	1776	U	1777	G	1778	*	C	1670	C	1671	cWW			cWW
71	IL_5AJ0_109	5AJ0	0.3885	0		A2	LSU rRNA	G	2701	U	2702	G	2703	*	C	2593	C	2594	cWW			cWW
72	IL_4V88_319	4V88	0.3141	0		A5	LSU rRNA	G	1776	U	1777	G	1778	*	C	1670	C	1671	cWW			cWW
73	IL_3J9W_039	3J9W	0.3538	0	Single stack bend (H)	AA	SSU rRNA	G	1051	U	1052	G	1053	*	C	1008	C	1009	cWW			cWW
74	IL_4V8P_371	4V8P	0.4071	0		F1	LSU rRNA	G	1643	A	1644	C	1645	*	G	1849	C	1850	cWW			cWW
75	IL_5A2Q_091	5A2Q	0.4154	0		2	SSU rRNA	G	1780	A	1781	G	1782	*	C	1751	C	1752	cWW	ncWB		cWW
76	IL_4U4U_456	4U4U	0.2724	0		7	5S rRNA	C	47	U	48	G	49	*	C	29	G	30	cWW			cWW
77	IL_5AJ0_014	5AJ0	0.3005	0		A2	LSU rRNA	C	171	C	172	G	173	*	C	256	G	257	cWW			cWW
78	IL_4V83_236	4V83	0.3746	0	Single stack bend	CV	domain 3 of PSIC IGR IRES RNA	C	6155	A	6156	A	6157	*	U	6172	G	6173	cWW			cWW
79	IL_3JCS_094	3JCS	0.4111	0		2	LSU rRNA	C	693	U	694	G	695	*	C	743	G	744	cWW			cWW
80	IL_3J7P_054	3J7P	0.3922	0		5	LSU rRNA	U	1672	U	1673	C	1674	*	G	1681	A	1682	ncWW			cWW
81	IL_3J7P_237	3J7P	0.3580	0		S2	SSU rRNA	U	1839	U	1840	C	1841	*	G	1858	A	1859	cWW			cWW
82	IL_3J7P_169	3J7P	0.3261	0		S2	SSU rRNA	U	218	U	219	U	220	*	A	301	A	302	cWW			ncWW
83	IL_3J7Y_005	3J7Y	0.3662	0		A	LSU rRNA	A	1863	A	1864	C	1865	*	G	2300	U	2301	ncWW			cWW
84	IL_3J7Y_044	3J7Y	0.3275	0		A	LSU rRNA	A	2748	A	2749	U	2750	*	A	2798	U	2799	cWW			cWW
85	IL_3J7Y_006	3J7Y	0.3513	0		A	LSU rRNA	A	1897	A	1898	G	1899	*	C	1875	U	1876	ncWW			cWW
86	IL_3J7P_083	3J7P	0.3524	0		5	LSU rRNA	A	2477	C	2478	G	2479	*	C	2499	U	2500	cWW			cWW
87	IL_5AJ0_101	5AJ0	0.2899	0		A2	LSU rRNA	A	2456	C	2457	G	2458	*	C	2478	U	2479	cWW			cWW
88	IL_3JAM_016	3JAM	0.3985	0		2	SSU rRNA	A	256	C	257	U	258	*	A	205	U	206	ncWW		ncWW	cWW
89	IL_5AJ0_026	5AJ0	0.4231	0		A2	LSU rRNA	G	470	C	471	G	472	*	C	670	C	671	cWW			ncWW
90	IL_4V4Q_202	4V4Q	0.5712	0		CA	SSU rRNA	U	472	U	473	G	474	*	U	458	A	459	cWW			cWW
91	IL_3J7Y_004	3J7Y	0.4408	0		A	LSU rRNA	U	2301	U	2302	A	2303	*	U	1862	A	1863	ncWW		ncWW	cWW
92	IL_3J7Y_028	3J7Y	0.4403	0		A	LSU rRNA	U	2660	U	2661	A	2662	*	U	2465	A	2466	cWW			ncWW
93	IL_3JAM_017	3JAM	0.4682	0		2	SSU rRNA	U	207	U	208	A	209	*	U	254	A	255	cWW			cWW
94	IL_3J7Y_043	3J7Y	0.4526	0		A	LSU rRNA	U	2799	U	2800	A	2801	*	U	2747	A	2748	cWW			cWW
95	IL_5LJ3_008	5LJ3	0.2003	0		Z	U2 snRNA	G	80	C	81	U	82	*	A	70	C	71	cWW			cWW
96	IL_3J7A_082	3J7A	0.2542	0		A	SSU rRNA	U	2005	U	2006	U	2007	*	A	1983	A	1984	cWW			cWW
97	IL_4V8P_375	4V8P	0.3273	0	Single stack bend (H)	F1	LSU rRNA	U	1802	U	1803	G	1804	*	C	1694	A	1695	cWW			cWW
98	IL_3JAM_011	3JAM	0.4227	0		2	SSU rRNA	U	291	U	292	C	293	*	G	123	A	124	cWW		ncWW	cWW
99	IL_3J7R_245	3J7R	0.4245	0		S6	tRNA	C	49	U	50	U	51	*	A	64	G	65	ncWW			cWW
100	IL_3J7P_126	3J7P	0.5051	0		5	LSU rRNA	U	4481	U	4482	C	4483	*	G	4472	A	4473	cWW			cWW
101	IL_3J7P_087	3J7P	0.4032	0	Single stack bend (H)	5	LSU rRNA	G	2722	U	2723	G	2724	*	C	2614	C	2615	cWW			cWW
102	IL_5AJ0_032	5AJ0	0.5457	0		A2	LSU rRNA	C	651	C	652	G	653	*	C	489	G	490	cWW			cWW
103	IL_5J7L_267	5J7L	0.6647	1	90 degree turn	DA	LSU rRNA	A	844	A	845\|\|A	U	847\|\|A	*	A	933	U	934	cWW			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAG*CC	14
CAC*GAAG	5
GUG*CC	5
CAA*UG	4
AAG*CU	4
UUC*GA	4
UUA*UA	4
CGG*CG	3
CGC*GG	3
GAA*UC	3
UAG*CA	3
CCU*AG	3
GCC*GC	3
GUC*GUC	2
GCG*CC	2
ACC*GU	2
AUG*CU	2
CUG*CG	2
CCG*CG	2
UUU*AA	2
ACG*CU	2
UAC*GAG	1
GAC*GAC	1
GAG*UAC	1
UGG*UG	1
UCU*GA	1
CAC*GG	1
GGA*UC	1
UCU*AA	1
CAG*UG	1
GGG*CC	1
CUC*GG	1
CCC*GG	1
GGC*GC	1
CAU*GG	1
GAU*GC	1
GACC*GC	1
AGC*GU	1
GUCC*GC	1
UAA*UG	1
GUC*GC	1
GAC*GC	1
AAC*GU	1
AAU*AU	1
ACU*AU	1
UUG*UA	1
GCU*AC	1
UUG*CA	1
CUU*AG	1
AU*AAUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	36
U*	24
C*	19
G*	11
A*AA	5
A*A	3
U*U	2
AC*	1
UC*	1
*AU	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_02315.1 Version IL_02315.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_02315.1 Version IL_02315.1 of this group appears in releases 2.0 to 2.0

Download

Csv

Json