Motif IL_02359.3 Version IL_02359.3 of this group appears in releases 1.1 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-14 | 1-16 | 2-6 | 2-15 | 3-6 | 4-5 | 7-14 | 8-12 | 9-13 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_009 | 4IOA | 0.1026 | 2 | X | LSU rRNA | G | 492 | A | 493 | A | 494 | C | 495 | * | G | 506 | A | 507 | G | 508 | U | 509 | G | 510 | A | 511 | A | 512 | A | 513 | A | 515 | G | 516 | A | 517 | C | 519 | tSS | cWW | cSW | tHH | tHS | cWW | cWB | tWH | tSH |
| 2 | IL_2QBG_016 | 2QBG | 0.0000 | 2 | B | LSU rRNA | G | 481 | A | 482 | A | 483 | C | 484 | * | G | 496 | A | 497 | G | 498 | U | 499 | G | 500 | A | 501 | A | 502 | A | 503 | A | 505 | G | 506 | A | 507 | C | 509 | tSS | cWW | cSW | tHH | tHS | cWW | cWB | tWH | tSH |
| 3 | IL_3V2F_014 | 3V2F | 0.1289 | 2 | A | LSU rRNA | G | 481 | A | 482 | A | 483 | C | 484 | * | G | 496 | A | 497 | G | 498 | U | 499 | G | 500 | A | 501 | A | 502 | A | 503 | A | 505 | G | 506 | A | 507 | C | 509 | tSS | cWW | ncSW | ntHH | tHS | cWW | cWB | tWH | tSH |
| 4 | IL_3U5H_015 | 3U5H | 0.3133 | 2 | 5 | LSU rRNA | G | 376 | A | 377 | A | 378 | C | 379 | * | G | 390 | A | 391 | G | 392 | U | 393 | G | 394 | A | 395 | A | 396 | A | 397 | A | 399 | G | 400 | U | 401 | C | 403 | ntSS | cWW | cSW | tHS | cWW | cWB | tWH | tSH | |
| 5 | IL_4A1B_012 | 4A1B | 0.3099 | 0 | 1 | LSU rRNA | G | 375 | A | 376 | A | 377 | C | 378 | * | G | 389 | G | 390 | G | 391 | C | 392 | U | 393 | A | 394 | A | 395 | A | 396 | A | 397 | G | 398 | A | 399 | C | 400 | ntSS | cWW | tHS | cWW | ncWB |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAC*GAGUGAAAGAGAAC | 1 |
| GAAC*GAGUGAAAAAGAAC | 1 |
| GAAC*GAGUGAAAUAGAGC | 1 |
| GAAC*GAGUGAAAAAGUAC | 1 |
| GAAC*GGGCUAAAAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*AGUGAAAGAGAA | 1 |
| AA*AGUGAAAAAGAA | 1 |
| AA*AGUGAAAUAGAG | 1 |
| AA*AGUGAAAAAGUA | 1 |
| AA*GGCUAAAAGA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_02359.3 | Only in the parent motif |
|---|---|---|---|
| IL_02359.2 Compare | IL_3U5H_015, IL_3V2F_014, IL_4A1B_012, IL_2QBG_016 | IL_4IOA_009 | IL_2ZJR_009 |
Children motifs
| Child motif | Common motif instances | Only in IL_02359.3 | Only in the child motif |
|---|---|---|---|
| IL_02359.4 Compare | IL_3U5H_015, IL_4IOA_009, IL_4A1B_012, IL_2QBG_016 | IL_3V2F_014 | IL_4NVV_015 |
- Annotations
-
- (5)
- Basepair signature
- cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.21 | Max 0.36
Coloring options: