Motif IL_02554.1 Version IL_02554.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-4 | 2-6 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BTS_285 | 4BTS | 0.1329 | 0 | DA | SSU rRNA | C | 435 | C | 436 | A | 437 | A | 438 | U | 439 | * | A | 452 | G | 453 | cSH | cWW | tWH | cWS | cWW | ||
| 2 | IL_3JAM_026 | 3JAM | 0.0000 | 0 | 2 | SSU rRNA | C | 442 | C | 443 | A | 444 | A | 445 | U | 446 | * | A | 459 | G | 460 | cSH | cWW | tWH | cWS | cWW | ||
| 3 | IL_3J7A_053 | 3J7A | 0.3563 | 2 | C-loop (H) | A | SSU rRNA | U | 1914 | C | 1915 | C | 1916 | C | 1917 | U | 1918 | * | A | 1258 | A | 1261 | cSH | cWW | cSH | tWH | cWS | cWW |
| 4 | IL_4V19_023 | 4V19 | 0.6228 | 3 | C-loop (H) | A | LSU rRNA | G | 680 | U | 681 | A | 683 | C | 684 | U | 685 | * | A | 692 | C | 695 | cWW | ntWH | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAU*AG | 2 |
| UCCCU*ACCA | 1 |
| GUAACU*AUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA* | 2 |
| CCC*CC | 1 |
| UAAC*UA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- C-loop (H) (2)
- (2)
- Basepair signature
- cWW-cSH-tWH-cSH-cWS-cWW
- Heat map statistics
- Min 0.13 | Avg 0.34 | Max 0.69
Coloring options: