Motif IL_03109.3 Version IL_03109.3 of this group appears in releases 3.96 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-6 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_015 | 4LFB | 0.1739 | 0 | C-loop | A | SSU rRNA | G | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | C | 390 | cWW | ntWH | cWS | cWW | |
| 2 | IL_8CRE_414 | 8CRE | 0.0730 | 0 | C-loop (H) | CM | SSU rRNA | C | 441 | C | 442 | A | 443 | A | 444 | U | 445 | * | A | 458 | G | 459 | cSH | cWW | tWH | cWS | cWW |
| 3 | IL_8P9A_397 | 8P9A | 0.0000 | 0 | sR | SSU rRNA | C | 443 | C | 444 | A | 445 | A | 446 | U | 447 | * | A | 460 | G | 461 | cSH | cWW | tWH | cWS | cWW | |
| 4 | IL_5J7L_018 | 5J7L | 0.1139 | 0 | C-loop | AA | SSU rRNA | A | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | U | 390 | cSH | cWW | tWH | cWS | cWW |
| 5 | IL_4LFB_013 | 4LFB | 0.6647 | 0 | C-loop | A | SSU rRNA | U | 304 | G | 305 | G | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | cWW | |||
| 6 | IL_5J7L_016 | 5J7L | 0.7303 | 0 | C-loop | AA | SSU rRNA | U | 304 | G | 305 | A | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAU*AG | 2 |
| GCAAU*AC | 1 |
| ACAAU*AU | 1 |
| UGGCC*GG | 1 |
| UGACC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA* | 4 |
| GGC* | 1 |
| GAC* | 1 |
- Annotations
-
- C-loop (4)
- C-loop (H) (1)
- (1)
- Basepair signature
- cWW-cWS-tWH-cWW-L
- Heat map statistics
- Min 0.07 | Avg 0.37 | Max 0.75
Coloring options: