Motif IL_04395.1 Version IL_04395.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-7 | 2-4 | 2-6 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8C3A_482 | 8C3A | 0.2217 | 1 | C-loop | 1 | LSU rRNA | U | 1497 | C | 1498 | A | 1499 | A | 1500 | C | 1501 | * | G | 1509 | A | 1511 | ncWW | tWH | cWS | cWW | |
| 2 | IL_8VTW_050 | 8VTW | 0.0000 | 1 | C-loop | 1A | LSU rRNA | G | 1319 | C | 1320 | A | 1321 | A | 1322 | U | 1323 | * | A | 1331 | C | 1333 | cWW | ncSH | tWH | cWS | cWW |
| 3 | IL_5J7L_291 | 5J7L | 0.1170 | 1 | C-loop | DA | LSU rRNA | C | 1319 | C | 1320 | A | 1321 | A | 1322 | C | 1323 | * | G | 1331 | G | 1333 | cWW | ncSH | tWH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCAAC*GGA | 1 |
| GCAAU*AGC | 1 |
| CCAAC*GGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA*G | 3 |
- Annotations
-
- C-loop (3)
- Basepair signature
- cWW-cWS-tWH-cWW-L
- Heat map statistics
- Min 0.12 | Avg 0.13 | Max 0.25
Coloring options: