Motif IL_04638.4 Version IL_04638.4 of this group appears in releases 4.0 to 4.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-10 | 4-6 | 5-11 | 8-9 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_091 | 4V9F | 0.3312 | 1 | 0 | LSU rRNA | G | 2809 | G | 2810 | A | 2811 | A | 2812 | A | 2813 | A | 2814 | A | 2816 | G | 2817 | * | C | 2672 | U | 2673 | G | 2674 | A | 2675 | C | 2676 | cWW | tSH | tHW | tHS | cWW | ||
| 2 | IL_9E6Q_093 | 9E6Q | 0.1380 | 1 | 1 | LSU rRNA | C | 2886 | G | 2887 | A | 2888 | G | 2889 | A | 2890 | C | 2891 | A | 2893 | G | 2894 | * | C | 2750 | U | 2751 | G | 2752 | A | 2753 | G | 2754 | cWW | tSH | tHW | tHS | cWW | ||
| 3 | IL_8B0X_160 | 8B0X | 0.0000 | 1 | tSH-tHS-tHW (H) | a | LSU rRNA | C | 2778 | G | 2779 | A | 2780 | G | 2781 | A | 2782 | U | 2783 | A | 2785 | G | 2786 | * | C | 2640 | U | 2641 | G | 2642 | A | 2643 | G | 2644 | cWW | tSH | tHW | cSH | tHS | cWW |
| 4 | IL_9DFE_101 | 9DFE | 0.0989 | 1 | 1A | LSU rRNA | C | 2774 | A | 2775 | A | 2776 | G | 2777 | A | 2778 | U | 2779 | A | 2781 | G | 2782 | * | U | 2636 | U | 2637 | G | 2638 | A | 2639 | G | 2640 | cWW | tSH | tHW | ncSH | tHS | cWW | |
| 5 | IL_7A0S_093 | 7A0S | 0.1118 | 1 | tSH-tHS-tHW | X | LSU rRNA | C | 2754 | A | 2755 | A | 2756 | G | 2757 | A | 2758 | U | 2759 | A | 2761 | G | 2762 | * | U | 2615 | U | 2616 | G | 2617 | A | 2618 | G | 2619 | cWW | tSH | tHW | ncSH | tHS | cWW |
| 6 | IL_4WF9_099 | 4WF9 | 0.1014 | 1 | tSH-tHS-tHW | X | LSU rRNA | C | 2801 | A | 2802 | A | 2803 | G | 2804 | A | 2805 | U | 2806 | A | 2808 | G | 2809 | * | U | 2663 | U | 2664 | G | 2665 | A | 2666 | G | 2667 | cWW | tSH | tHW | ncSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAGAUGAG*UUGAG | 3 |
| GGAAAAGAG*CUGAC | 1 |
| CGAGACGAG*CUGAG | 1 |
| CGAGAUGAG*CUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGAUGA*UGA | 3 |
| GAAAAGA*UGA | 1 |
| GAGACGA*UGA | 1 |
| GAGAUGA*UGA | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 | 4.8 | 4.9 | 4.10 | 4.11 | 4.12 | 4.13 | 4.14 | 4.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 | 2026-03-25 | 2026-04-22 | 2026-05-20 | 2026-06-17 | 2026-07-15 | 2026-08-12 | 2026-09-09 | 2026-10-07 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- tSH-tHS-tHW (2)
- tSH-tHS-tHW (H) (1)
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Heat map statistics
- Min 0.09 | Avg 0.17 | Max 0.38
Coloring options: