Motif IL_04650.1 Version IL_04650.1 of this group appears in releases 3.77 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 1-2 | 1-9 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6N2V_002 | 6N2V | 0.3872 | 2 | Minor groove platform | A | X. oryzae Mn riboswitch optimized construct | A | 45 | A | 46 | C | 47 | A | 48 | C | 51 | U | 52 | C | 53 | * | G | 64 | U | 65 | cSH | cWW | cWW |
| 2 | IL_7D81_001 | 7D81 | 0.1056 | 3 | A | nadA RNA | A | 7 | A | 8 | C | 9 | A | 10 | C | 14 | C | 15 | G | 16 | * | C | 43 | U | 44 | cSH | cWW | cWW | |
| 3 | IL_7D7W_001 | 7D7W | 0.0000 | 3 | A | 18GAAA (52-MER) | A | 7 | A | 8 | C | 9 | A | 10 | C | 14 | C | 15 | G | 16 | * | C | 45 | U | 46 | cSH | cWW | cWW | |
| 4 | IL_6TFF_001 | 6TFF | 0.0521 | 3 | A | nadA RNA | A | 7 | A | 8 | C | 9 | A | 10 | C | 14 | C | 15 | G | 16 | * | C | 45 | U | 46 | cSH | cWW | cWW | |
| 5 | IL_7D7V_001 | 7D7V | 0.1126 | 3 | A | nadA RNA | A | 6 | A | 7 | C | 8 | A | 9 | C | 13 | C | 14 | G | 15 | * | C | 52 | U | 53 | cSH | cWW | cWW | |
| 6 | IL_6CB3_004 | 6CB3 | 0.4354 | 2 | Minor groove platform | B | RNA (99-MER) | G | 38 | U | 39 | C | 40 | A | 41 | U | 44 | C | 45 | G | 46 | * | C | 59 | C | 60 | cSH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AACAUCCCCG*CU | 2 |
| AACAACCCCG*CU | 2 |
| AACAUACUC*GU | 1 |
| GUCAAUUCG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAUCCCC* | 2 |
| ACAACCCC* | 2 |
| ACAUACU* | 1 |
| UCAAUUC* | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Minor groove platform (2)
- Basepair signature
- cWW-cSH-cWW-L-L-R-L
- Heat map statistics
- Min 0.05 | Avg 0.25 | Max 0.58
Coloring options: