Motif IL_04797.1 Version IL_04797.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 3-12 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7JNH_001 | 7JNH | 0.4829 | 1 | B | Core double ENE RNA (Xtal construct) from Oryza sativa transposon,Core double ENE RNA (Xtal construct) from Oryza sativa transposon | G | 73 | G | 74 | U | 75 | U | 76 | U | 77 | U | 78 | C | 79 | * | G | 8 | U | 9 | U | 10 | U | 11 | U | 12 | U | 13 | C | 15 | cWW | cWW | |||||
| 2 | IL_3P22_001 | 3P22 | 0.0000 | 2 | A | Core ENE hairpin from KSHV PAN RNA | G | 7 | U | 8 | U | 9 | U | 10 | U | 11 | U | 12 | C | 13 | * | G | 26 | U | 27 | U | 28 | U | 29 | U | 30 | U | 31 | C | 34 | cWW | cWW | |||||
| 3 | IL_6X5M_003 | 6X5M | 0.3453 | 2 | r | ggPAN RNA (39-MER) | G | 3 | U | 4 | U | 5 | U | 6 | U | 7 | U | 8 | C | 9 | * | G | 25 | U | 26 | U | 27 | U | 28 | U | 29 | U | 30 | C | 33 | cWW | cWW | |||||
| 4 | IL_5TBW_019 | 5TBW | 0.6218 | 2 | 1 | LSU rRNA | G | 517 | G | 518 | A | 521 | A | 522 | A | 523 | U | 524 | C | 525 | * | G | 567 | G | 568 | A | 569 | A | 570 | U | 571 | A | 572 | C | 573 | cWW | tHW | tHW | ntHW | cBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUUUC*GUUUUUAUC | 2 |
| GGUUUUC*GUUUUUAC | 1 |
| GGAUAAAUC*GGAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUUU*UUUUUAU | 2 |
| GUUUU*UUUUUA | 1 |
| GAUAAAU*GAAUA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.35 | Avg 0.40 | Max 0.62
Coloring options: