Motif IL_05192.1 Version IL_05192.1 of this group appears in releases 3.80 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 3-8 | 4-7 | 4-8 | 5-6 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_7A0S_104 | 7A0S | 0.5771 | 1 | Y | 5S rRNA | G | 51 | G | 52 | U | 54 | C | 55 | G | 56 | * | C | 32 | C | 33 | C | 34 | C | 35 | cWW | ncBW | cWW | ||
2 | IL_3CUL_001 | 3CUL | 0.0000 | 1 | C | RNA (92-MER) | U | 44 | A | 45 | U | 47 | G | 48 | G | 49 | * | C | 22 | A | 23 | G | 24 | G | 25 | cWW | cBW | cWW | cWW | |
3 | IL_6JXM_002 | 6JXM | 0.5655 | 0 | B | tRNA | C | 35 | G | 36 | A | 37 | A | 38 | G | 39 | * | U | 50 | G | 51 | G | 52 | G | 53 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGGUCG*CCCC | 1 |
UAUUGG*CAGG | 1 |
CGAAG*UGGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGUC*CC | 1 |
AUUG*AG | 1 |
GAA*GG | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Heat map statistics
- Min 0.57 | Avg 0.41 | Max 0.72
Coloring options: