Motif IL_05265.1 Version IL_05265.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CZR_154 | 6CZR | 0.6948 | 2 | 1a | SSU rRNA | U | 1035 | A | 1038 | U | 1039 | * | A | 1186 | U | 1187 | G | 1188 | cWW | ncWS | ncWS | ||
| 2 | IL_3E5C_001 | 3E5C | 0.0000 | 3 | Isolated non-canonical cWW pair | A | SMK box (SAM-III) Riboswitch | G | 12 | A | 13 | U | 14 | * | A | 27 | G | 28 | C | 32 | cWW | cWW | cWW | |
| 3 | IL_5TBW_103 | 5TBW | 0.5403 | 0 | Isolated non-canonical cWW pair | 1 | LSU rRNA | G | 2824 | C | 2825 | U | 2826 | * | G | 2863 | A | 2864 | U | 2865 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCAU*AUG | 1 |
| GAU*AGAUGC | 1 |
| GCU*GAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCA*U | 1 |
| A*GAUG | 1 |
| C*A | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (2)
- (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.54 | Avg 0.47 | Max 0.88
Coloring options: