Motif IL_05723.1 Version IL_05723.1 of this group appears in releases 1.0 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | 3-8 | 4-7 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3V2F_027 | 3V2F | 0.2168 | 0 | A | 23S Ribosomal RNA | U | 858 | G | 859 | U | 860 | A | 861 | G | 862 | * | C | 915 | G | 916 | A | 917 | A | 918 | G | 919 | cWW | cSH | tWH | tHS | cWW |
2 | IL_1S72_034 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | G | 952 | G | 953 | U | 954 | A | 955 | G | 956 | * | C | 1011 | A | 1012 | A | 1013 | A | 1014 | C | 1015 | cWW | cSH | tWH | tHS | cWW |
3 | IL_2QBG_031 | 2QBG | 0.1602 | 0 | B | 23S rRNA | G | 858 | G | 859 | U | 860 | A | 861 | G | 862 | * | C | 915 | G | 916 | A | 917 | A | 918 | U | 919 | cWW | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGUAG*CGAAG | 1 |
GGUAG*CAAAC | 1 |
GGUAG*CGAAU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUA*GAA | 2 |
GUA*AAA | 1 |
Release history
Release | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_05723.1 | Only in the parent motif |
---|---|---|---|
IL_24022.2 Compare | IL_3V2F_027, IL_1S72_034, IL_2QBG_031 | IL_3V2F_098, IL_1S72_089, IL_2ZJR_094 |
Children motifs
Child motif | Common motif instances | Only in IL_05723.1 | Only in the child motif |
---|---|---|---|
IL_05723.2 Compare | IL_1S72_034, IL_2QBG_031 | IL_3V2F_027 | IL_4NVV_029 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.16 | Avg 0.15 | Max 0.30
Coloring options: