Motif IL_05821.1 Version IL_05821.1 of this group appears in releases 4.0 to 4.5

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-8	4-7	5-6
1	IL_9DFE_052	9DFE	0.2648	0	tSH-tHW-tHS	1A	LSU rRNA	U	1357	G	1358	A	1359	A	1360	G	1361	*	C	1370	G	1371	U	1372	A	1373	G	1374	cWW	tSH	ntWW	tHS	cWW
2	IL_7A0S_049	7A0S	0.2743	0	tSH-tHW-tHS	X	LSU rRNA	U	1370	G	1371	A	1372	G	1373	G	1374	*	C	1383	G	1384	C	1385	A	1386	G	1387	cWW	tSH	tHW	tHS	cWW
3	IL_9E6Q_025	9E6Q	0.2144	0	tSH-tHW-tHS (H)	1	LSU rRNA	C	745	G	746	A	747	G	748	G	749	*	C	728	G	729	C	730	A	731	G	732	cWW	tSH	tHW	tHS	cWW
4	IL_4V9F_022	4V9F	0.2570	0	tSH-tHW-tHS	0	LSU rRNA	C	719	G	720	A	721	G	722	G	723	*	C	705	G	706	C	707	A	708	G	709	cWW	tSH	tHW	tHS	cWW
5	IL_4WF9_052	4WF9	0.2200	0	tSH-tHW-tHS	X	LSU rRNA	U	1394	G	1395	A	1396	G	1397	G	1398	*	C	1407	G	1408	U	1409	A	1410	G	1411	cWW		ntHW	ntHS	cWW
6	IL_8B0X_112	8B0X	0.2162	0	tSH-tHW-tHS (H)	a	LSU rRNA	C	1359	G	1360	A	1361	G	1362	G	1363	*	C	1372	G	1373	U	1374	A	1375	G	1376	cWW	tSH	tHW	tHS	cWW
7	IL_8B0X_026	8B0X	0.1869	0	tSH-tHW-tHS (H)	A	SSU rRNA	U	757	C	758	A	759	G	760	G	761	*	C	580	G	581	C	582	A	583	G	584	cWW	tSH	tHW	tHS	cWW
8	IL_4LFB_023	4LFB	0.1586	0	tSH-tHW-tHS	A	SSU rRNA	U	757	G	758	A	759	G	760	G	761	*	U	580	G	581	U	582	A	583	G	584	cWW	tSH	tHW	tHS	cWW
9	IL_8P9A_424	8P9A	0.0784	0	tSH-tHW-tHS	sR	SSU rRNA	C	990	G	991	A	992	A	993	G	994	*	C	1010	G	1011	U	1012	A	1013	G	1014	cWW	tSH	tHW	tHS	cWW
10	IL_8CRE_438	8CRE	0.0000	0	tSH-tHW-tHS	CM	SSU rRNA	C	975	G	976	A	977	A	978	G	979	*	C	995	G	996	U	997	A	998	G	999	cWW	tSH	tHW	tHS	cWW
11	IL_8GLP_242	8GLP	0.0633	0		S2	SSU rRNA	C	1047	G	1048	A	1049	A	1050	G	1051	*	C	1067	G	1068	U	1069	A	1070	G	1071	cWW	tSH	tHW	tHS	cWW
12	IL_4LFB_033	4LFB	0.0943	0	tSH-tHW-tHS	A	SSU rRNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH	tHW	tHS	cWW
13	IL_8B0X_036	8B0X	0.1060	0	tSH-tHW-tHS (H)	A	SSU rRNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH	tHW	tHS	cWW
14	IL_8P9A_407	8P9A	0.1582	0	tSH-tHW-tHS	sR	SSU rRNA	U	968	C	969	A	970	A	971	G	972	*	C	627	G	628	U	629	A	630	G	631	cWW	tSH	tHW	tHS	cWW
15	IL_8GLP_228	8GLP	0.1675	0	tSH-tHW-tHS (H)	S2	SSU rRNA	U	1025	C	1026	A	1027	A	1028	G	1029	*	C	676	G	677	U	678	A	679	G	680	cWW	tSH	tHW	tHS	cWW
16	IL_8CRE_426	8CRE	0.1514	0	tSH-tHW-tHS	CM	SSU rRNA	U	953	C	954	A	955	A	956	G	957	*	C	625	G	626	U	627	A	628	G	629	cWW	tSH	tHW	tHS	cWW
17	IL_4V9F_055	4V9F	0.2328	0	tSH-tHW-tHS	0	LSU rRNA	U	1639	C	1640	A	1641	A	1642	C	1643	*	G	1542	G	1543	U	1544	C	1545	G	1546	cWW	tSH	tHW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAG*CGUAG	3
UCAAG*CGUAG	3
CGAGG*CGCAG	2
CAAAC*GGUAG	2
UGAAG*CGUAG	1
UGAGG*CGCAG	1
UGAGG*CGUAG	1
CGAGG*CGUAG	1
UCAGG*CGCAG	1
UGAGG*UGUAG	1
UCAAC*GGUCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*GUA	4
GAG*GCA	3
GAG*GUA	3
CAA*GUA	3
AAA*GUA	2
CAG*GCA	1
CAA*GUC	1

Release history

Release	4.0	4.1	4.2	4.3	4.4	4.5
Date	2025-08-13	2025-09-10	2025-10-08	2025-11-05	2025-12-03	2025-12-31
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tSH-tHW-tHS (11)
tSH-tHW-tHS (H) (5)
(1)
Basepair signature: cWW-tSH-tHW-tHS-cWW
Heat map statistics: Min 0.06 | Avg 0.21 | Max 0.38

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Coloring options: Nucleotide numbers

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