#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 7 8 91-92-73-64-5
1 IL_4A1B_0754A1B0.97162126S RRNAC1726U1727A1728G1730*U1763G1764U1765A1766G1768cWWcWW
2 IL_4BPP_0074BPP0.00001A18S RRNAU63U64A66G67*C78G79A80A81A82cWWtWHtHScWW
3 IL_3U5F_0073U5F0.23222618S rRNAU64A65A67G69*U82G83A84A85A86cWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAUG*UGUAUG1
UUCAG*CGAAA1
UAUAAG*UGAAA1
Non-Watson-Crick part of the motif
SequenceCounts
UAU*GUAU1
UCA*GAA1
AUAA*GAA1

Release history

Release1.51.61.71.81.91.101.111.121.131.14
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-27
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_06180.1Only in the parent motif
IL_49550.1
Compare
IL_4A1B_075IL_3U5F_007, IL_4BPP_007IL_4A1B_029
IL_31290.1
Compare
IL_3U5F_007IL_4A1B_075, IL_4BPP_007

Children motifs

Child motifCommon motif instancesOnly in IL_06180.1Only in the child motif
IL_21427.1
Compare
IL_3U5F_007, IL_4BPP_007IL_4A1B_075IL_4CUV_104, IL_4CUX_007, IL_2QBG_075
IL_17204.1
Compare
IL_4A1B_075IL_3U5F_007, IL_4BPP_007IL_4CUV_129
Annotations
  • (3)
  • Basepair signature
    cWW-R-tWH-tHS-cWW
    Heat map statistics
    Min 0.23 | Avg 0.48 | Max 0.98
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