Motif IL_06180.1 Version IL_06180.1 of this group appears in releases 1.5 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 3-6 | 4-5 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4A1B_075 | 4A1B | 0.9716 | 2 | 1 | 26S RRNA | C | 1726 | U | 1727 | A | 1728 | G | 1730 | * | U | 1763 | G | 1764 | U | 1765 | A | 1766 | G | 1768 | cWW | cWW | ||
2 | IL_4BPP_007 | 4BPP | 0.0000 | 1 | A | 18S RRNA | U | 63 | U | 64 | A | 66 | G | 67 | * | C | 78 | G | 79 | A | 80 | A | 81 | A | 82 | cWW | tWH | tHS | cWW |
3 | IL_3U5F_007 | 3U5F | 0.2322 | 2 | 6 | 18S rRNA | U | 64 | A | 65 | A | 67 | G | 69 | * | U | 82 | G | 83 | A | 84 | A | 85 | A | 86 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUAUG*UGUAUG | 1 |
UUCAG*CGAAA | 1 |
UAUAAG*UGAAA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UAU*GUAU | 1 |
UCA*GAA | 1 |
AUAA*GAA | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_06180.1 | Only in the parent motif |
---|---|---|---|
IL_49550.1 Compare | IL_4A1B_075 | IL_3U5F_007, IL_4BPP_007 | IL_4A1B_029 |
IL_31290.1 Compare | IL_3U5F_007 | IL_4A1B_075, IL_4BPP_007 |
Children motifs
Child motif | Common motif instances | Only in IL_06180.1 | Only in the child motif |
---|---|---|---|
IL_21427.1 Compare | IL_3U5F_007, IL_4BPP_007 | IL_4A1B_075 | IL_4CUV_104, IL_4CUX_007, IL_2QBG_075 |
IL_17204.1 Compare | IL_4A1B_075 | IL_3U5F_007, IL_4BPP_007 | IL_4CUV_129 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-tWH-tHS-cWW
- Heat map statistics
- Min 0.23 | Avg 0.48 | Max 0.98
Coloring options: