#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_1XOK_0011XOK0.81592Basepair outside cWWAalfalfa mosaic virus RNA 3' UTRC846U847*A864G867cWWcWW
2 IL_1XOK_0021XOK0.73982Basepair outside cWWA+Balfalfa mosaic virus RNA 3' UTRC868C869*G877G880cWWcWW
3 IL_387D_001387D0.67752Multiple bulged basesARNA PseudoknotU1C2*G15A18cWWcWW
4 IL_1U9S_0081U9S0.53441Stack outside cWWARIBONUCLEASE PG195C196*G217C219cWWcWW
5 IL_3U5H_0313U5H0.50031 525S rRNAG833U834*G859C861cWWcWW
6 IL_3V2F_0083V2F0.52671 A23S Ribosomal RNAG271|||IC271|||J*G271|||MC271|||OcWWcWW
7 IL_3SNP_0023SNP0.51071 Cferritin H IRE RNAA13C14*G18U20cWWcWW
8 IL_2QBG_0222QBG0.48181 B23S rRNAG697C698*G763C765cWWcWW
9 IL_3SN2_0023SN20.51241Single bulged CBtransferrin receptor iron regulatory element B RNAG13C14*G18C20cWWcWW
10 IL_4A1B_1134A1B0.13502 126S RRNAC2869U2870*A2928G2931cWWcWW
11 IL_3U5H_1153U5H0.10142 525S rRNAC2881U2882*A2940G2943cWWcWW
12 IL_1S72_0861S720.00002 0 LSU rRNAC2547C2548*G2606G2609cWWcWW
13 IL_3G78_0153G780.51242 AGroup II catalytic intron D1-D4-1U365A366*U375G378cWWcWW
14 IL_3V2F_0953V2F0.36452 A23S Ribosomal RNAC2512G2513*C2571G2574cWWcWW
15 IL_2ZJR_0912ZJR0.40392 X LSU rRNAC2491G2492*C2550G2553cWWcWW
16 IL_2QBG_0972QBG0.53632 B23S rRNAC2512A2513*U2571G2574cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CU*AACG2
CG*CACG2
CU*AAUG1
CC*GAUG1
UC*GGAA1
GC*GGC1
GU*GGC1
GC*GUC1
AC*GUU1
GC*GAC1
GC*GCC1
CC*GUCG1
UA*UACG1
CA*UACG1
Non-Watson-Crick part of the motif
SequenceCounts
*AC6
*AU2
*G2
*U2
*GA1
*A1
*C1
*UC1

Release history

Release0.70.80.9
Date2013-02-172013-02-172013-02-17
Status> 2 parentsExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_06429.1Only in the parent motif
IL_73663.1
Compare
IL_387D_001, IL_2QBG_022, IL_1U9S_008, IL_3SN2_002, IL_1XOK_001, IL_4A1B_113, IL_2ZJR_091, IL_1XOK_002, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031IL_3V2F_008, IL_3V2F_095, IL_2QBG_097, IL_3G78_015IL_3SNP_004, IL_3UXR_008, IL_3UXR_096
IL_32390.1
Compare
IL_3G78_015IL_387D_001, IL_3V2F_095, IL_2QBG_097, IL_3SN2_002, IL_2QBG_022, IL_1U9S_008, IL_1XOK_001, IL_4A1B_113, IL_2ZJR_091, IL_1XOK_002, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_3V2F_008IL_2QBG_086, IL_2NZ4_007, IL_1S72_045, IL_2XZM_033, IL_1S72_042, IL_3U5H_063, IL_4A1B_063, IL_3UXR_107, IL_3U5H_137, IL_1KXK_003, IL_1FJG_022, IL_2NZ4_004, IL_3U5F_033, IL_1S72_022, IL_2ZJR_024, IL_1FJG_005, IL_2AW7_029, IL_3U5H_019, IL_2AW7_005, IL_1S72_099, IL_2QBG_060
IL_18947.1
Compare
IL_2QBG_097IL_387D_001, IL_3G78_015, IL_3V2F_095, IL_2QBG_022, IL_3SN2_002, IL_1U9S_008, IL_1XOK_001, IL_4A1B_113, IL_2ZJR_091, IL_1XOK_002, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_3V2F_008IL_2ZJR_098, IL_3U5F_086, IL_3UXR_102

Children motifs

Child motifCommon motif instancesOnly in IL_06429.1Only in the child motif
IL_06429.2
Compare
IL_387D_001, IL_3V2F_095, IL_2QBG_097, IL_3SN2_002, IL_2QBG_022, IL_1U9S_008, IL_1XOK_001, IL_4A1B_113, IL_2ZJR_091, IL_1XOK_002, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_3V2F_008IL_3G78_015IL_4FAW_014
Annotations
  • Basepair outside cWW (2)
  • Stack outside cWW (1)
  • Multiple bulged bases (1)
  • Single bulged C (1)
  • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.55 | Max 0.96
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