Motif IL_06484.1 Version IL_06484.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 5-6 | 5-7 | 8-9 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_020 | 1FJG | 0.0000 | 0 | SSU/LSU pseudoknot (H) | A | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | C | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | ncSH | ntSW | cWW |
2 | IL_1S72_039 | 1S72 | 0.2593 | 0 | SSU/LSU pseudoknot (H) | 0 | LSU rRNA | U | 1101 | C | 1102 | C | 1103 | C | 1104 | C | 1105 | A | 1106 | A | 1107 | G | 1108 | * | C | 1254 | A | 1255 | cWW | cSH | cWW | |
3 | IL_2ZJR_033 | 2ZJR | 0.3251 | 0 | SSU/LSU pseudoknot (H) | X | LSU rRNA | U | 1015 | C | 1016 | C | 1017 | C | 1018 | U | 1019 | A | 1020 | A | 1021 | A | 1022 | * | U | 1161 | A | 1162 | cWW | ncSH | cWW | |
4 | IL_3F1H_036 | 3F1H | 0.3402 | 0 | A | 23S RRNA | C | 1004 | C | 1005 | C | 1006 | C | 1007 | C | 1008 | A | 1009 | A | 1010 | G | 1011 | * | C | 1150 | G | 1151 | cWW | cSH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGGCCAAC*GG | 1 |
UCCCCAAG*CA | 1 |
UCCCUAAA*UA | 1 |
CCCCCAAG*CG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CCCCAA* | 2 |
GGCCAA* | 1 |
CCCUAA* | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_06484.1 | Only in the child motif |
---|---|---|---|
IL_97493.1 Compare | IL_1FJG_020, IL_2ZJR_033 | IL_1S72_039, IL_3F1H_036 | IL_2QBG_037, IL_2QBG_086, IL_2NZ4_004, IL_2OZB_001, IL_2XZM_028, IL_3O58_065, IL_3O30_066, IL_2AW7_027, IL_3PYO_057 |
IL_63749.1 Compare | IL_1S72_039 | IL_1FJG_020, IL_2ZJR_033, IL_3F1H_036 | IL_3PYO_036 |
- Annotations
-
- SSU/LSU pseudoknot (H) (3)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.18 | Avg 0.19 | Max 0.34
Coloring options: