#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 101-105-65-78-9
1 IL_1FJG_0201FJG0.00000SSU/LSU pseudoknot (H)A SSU rRNAC504G505G506C507C508A509A510C511*G540G541cWWncSHntSWcWW
2 IL_1S72_0391S720.25930SSU/LSU pseudoknot (H)0 LSU rRNAU1101C1102C1103C1104C1105A1106A1107G1108*C1254A1255cWWcSHcWW
3 IL_2ZJR_0332ZJR0.32510SSU/LSU pseudoknot (H)X LSU rRNAU1015C1016C1017C1018U1019A1020A1021A1022*U1161A1162cWWncSHcWW
4 IL_3F1H_0363F1H0.34020A23S RRNAC1004C1005C1006C1007C1008A1009A1010G1011*C1150G1151cWWcSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGGCCAAC*GG1
UCCCCAAG*CA1
UCCCUAAA*UA1
CCCCCAAG*CG1
Non-Watson-Crick part of the motif
SequenceCounts
CCCCAA*2
GGCCAA*1
CCCUAA*1

Release history

Release0.10.20.30.4
Date2011-12-082011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_06484.1Only in the child motif
IL_97493.1
Compare
IL_1FJG_020, IL_2ZJR_033IL_1S72_039, IL_3F1H_036IL_2QBG_037, IL_2QBG_086, IL_2NZ4_004, IL_2OZB_001, IL_2XZM_028, IL_3O58_065, IL_3O30_066, IL_2AW7_027, IL_3PYO_057
IL_63749.1
Compare
IL_1S72_039IL_1FJG_020, IL_2ZJR_033, IL_3F1H_036IL_3PYO_036
Annotations
  • SSU/LSU pseudoknot (H) (3)
  • (1)
  • Basepair signature
    Heat map statistics
    Min 0.18 | Avg 0.19 | Max 0.34
    Help

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