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Motif IL_06586.2 Version IL_06586.2 of this group appears in releases 3.93 to 3.94

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-53-4
1 IL_4V84_4204V840.52350Single stack bendAVRNA (34-MER)C6181A6182G6183*C6194G6195ncWWcWW
2 IL_5VSU_0035VSU0.55260Single stack bendI U6 snRNAA75A76G77*C69U70cWWcWW
3 IL_9DFE_0579DFE0.57500Single stack bend1A LSU rRNAG1448A1449G1450*C1462C1463cWWncWWcWW
4 IL_9DFE_0919DFE0.39970Single stack bend1A LSU rRNAC2498C2499U2500*A2453G2454cWWcWW
5 IL_7A0S_0837A0S0.37530Single stack bendX LSU rRNAC2477C2478U2479*A2432G2433cWWcWW
6 IL_4WF9_0894WF90.34770Single stack bendX LSU rRNAC2525C2526U2527*A2480G2481cWWcWW
7 IL_5J7L_3915J7L0.23610Single stack bendDA LSU rRNAOMC2498C2499U2500*A2453G2454cWWcWW
8 IL_8P9A_2638P9A0.34650Single stack bendAR LSU rRNAU1111A1112G1113*C969A970cWWcWW
9 IL_4V9F_0054V9F0.23360Single stack bend0 LSU rRNAG182A183G184*C153C154cWWcWW
10 IL_8P9A_2338P9A0.21800Single stack bendAR LSU rRNAG56A57G58*C27C28cWWcWW
11 IL_9DFE_0059DFE0.00000Single stack bend1A LSU rRNAG212A213G214*C183C184cWWcWW
12 IL_7MLX_0017MLX0.15180Single stack bendRRNA (65-MER)G48A49U50*A37C38cWWcWW
13 IL_4WF9_0074WF90.12840Single stack bendX LSU rRNAG215A216G217*C186C187cWWcWW
14 IL_5J7L_2495J7L0.20420Single stack bendDA LSU rRNAG212A213G214*C183C184cWWcWW
15 IL_7A0S_0057A0S0.18410Single stack bendX LSU rRNAA189A190G191*C160U161cWWcWW
16 IL_8P9A_2988P9A0.22000Single stack bendAR LSU rRNAG1776U1777G1778*C1670C1671cWWcWW
17 IL_4C7O_0024C7O0.30760Single stack bendESRP RNAA36U37G38*C8U9cWWcWW
18 IL_8P9A_2388P9A0.22220Single stack bendAR LSU rRNAC163A164A165*U257G258cWWcWW
19 IL_8P9A_3678P9A0.23830Single stack bendAS 5S rRNAC47U48G49*C29G30cWWcWW
20 IL_8C3A_1468C3A0.23900Single stack bend3 5S rRNAC47C48G49*C29G30cWWcWW
21 IL_5J7L_0445J7L0.38650Single stack bendAA SSU rRNAG1041A1042G1043*C998C999cWWcWW
22 IL_5J7L_2695J7L0.34480Single stack bendDA LSU rRNAG926A927A928*U850C851cWWcWW
23 IL_4V9F_0814V9F0.31150Single stack bend0 LSU rRNAU2436A2437G2438*C2454A2455cWWcWW
24 IL_7A0S_0547A0S0.22150Single stack bendX LSU rRNAA1463A1464G1465*C1477U1478cWWcWW
25 IL_5J7L_0325J7L0.24220Single stack bendAA SSU rRNAA746A747G748*C658U659cWWcWW
26 IL_8P9A_3288P9A0.35361Single stack bend with bulgeAR LSU rRNAG2770U2771C2773*G2787C2788cWWcWW
27 IL_4V83_2364V830.45950Single stack bendCVdomain 3 of PSIC IGR IRES RNAC6155A6156A6157*U6172G6173cWWcWW
28 IL_4LFB_0414LFB0.32710Single stack bendA SSU rRNAG1002G1003G1003|||A*C1038C1039cWWcWW
29 IL_5IBB_3405IBB0.31260Single base bend1L tRNAG63U64C65*G50C51cWWcWW
30 IL_5J7L_2665J7L0.25730Single stack bendDA LSU rRNAG940A941G942*C837C838cWWncWW
31 IL_9DFE_0229DFE0.266301A LSU rRNAG940A941G942*C837C838cWWcWW
32 IL_4WF9_0284WF90.31350Single stack bendX LSU rRNAG984A985G986*C882C883cWWcWW
33 IL_7A0S_0227A0S0.27630Single stack bendX LSU rRNAG951A952G953*C850C851cWWcWW
34 IL_3MOJ_0043MOJ0.44650Single stack bendA LSU rRNAC2540A2541A2542*U2522G2523cWWcWW
35 IL_6FZ0_0016FZ00.42870Single stack bendASAM-V riboswitchC46U47A48*U20G21cWWcWW
36 IL_2QWY_0082QWY0.43450Single stack bendCSAM-II riboswitchC43U44A45*U21G22cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAG*CC11
AAG*CU4
CCU*AG3
CAA*UG3
UAG*CA2
CUA*UG2
CAG*CG1
(OMC)CU*AG1
GAU*AC1
GUG*CC1
AUG*CU1
CUG*CG1
CCG*CG1
GAA*UC1
GUCC*GC1
GGG*CC1
GUC*GC1
Non-Watson-Crick part of the motif
SequenceCounts
A*23
U*6
C*5
UC*1
G*1

Release history

Release3.933.94
Date2025-01-292025-02-26
StatusUpdated, 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single stack bend (33)
  • Single base bend (1)
  • Single stack bend with bulge (1)
  • (1)
    • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.08 | Avg 0.41 | Max 0.94
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