Motif IL_06671.1 Version IL_06671.1 of this group appears in releases 4.0 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-7 | 2-6 | 3-7 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8OI5_117 | 8OI5 | 0.1138 | 2 | Major groove minor groove platform with tHH (H) | 1 | LSU rRNA | U | 3019 | A | 3020 | A | 3021 | U | 3022 | U | 3023 | * | A | 3063 | A | 3066 | cWW | ntHH | cWW | ||
| 2 | IL_9AXU_110 | 9AXU | 0.0000 | 2 | Major groove minor groove platform with tHH (H) | 2 | LSU rRNA | U | 3143 | C | 3144 | A | 3145 | U | 3146 | U | 3147 | * | A | 3187 | A | 3190 | cWW | tHH | cWW | ||
| 3 | IL_8P9A_345 | 8P9A | 0.1097 | 2 | Major groove minor groove platform with tHH (H) | AR | LSU rRNA | U | 3047 | A | 3048 | A | 3049 | U | 3050 | U | 3051 | * | A | 3091 | A | 3094 | cWW | tHH | cWW | ||
| 4 | IL_4WF9_050 | 4WF9 | 0.2152 | 1 | Major groove minor groove platform with tHH | X | LSU rRNA | G | 1356 | G | 1357 | A | 1358 | A | 1359 | G | 1360 | * | C | 1368 | C | 1370 | cWW | tHH | cWS | cWW | |
| 5 | IL_7A0S_047 | 7A0S | 0.3163 | 1 | C-loop | X | LSU rRNA | G | 1332 | G | 1333 | A | 1334 | A | 1335 | G | 1336 | * | C | 1344 | C | 1346 | cWW | cWS | cWW | ||
| 6 | IL_9AXU_059 | 9AXU | 0.2858 | 1 | C-loop (H) | 2 | LSU rRNA | U | 1535 | G | 1536 | A | 1537 | A | 1538 | C | 1539 | * | G | 1547 | A | 1549 | cWW | cWS | cWW | ||
| 7 | IL_8GLP_301 | 8GLP | 0.3002 | 1 | C-loop (H) | L5 | LSU rRNA | OMU | 2415 | G | 2416 | A | 2417 | A | 2418 | C | 2419 | * | G | 2427 | A | 2429 | cWW | cWS | cWW | ||
| 8 | IL_9E6Q_061 | 9E6Q | 0.7762 | 0 | 1 | LSU rRNA | U | 1796 | G | 1797 | A | 1798 | C | 1799 | C | 1800 | * | G | 2125 | G | 2126 | cWW | ntHS | cWW | |||
| 9 | IL_4LFB_013 | 4LFB | 0.6330 | 0 | C-loop | A | SSU rRNA | U | 304 | G | 305 | G | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | cWW | |||
| 10 | IL_8B0X_015 | 8B0X | 0.6456 | 0 | C-loop (H) | A | SSU rRNA | U | 304 | G | 305 | A | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAUU*ACCA | 2 |
| GGAAG*CGC | 2 |
| UGACC*GG | 2 |
| UCAUU*AUCA | 1 |
| UGAAC*GGA | 1 |
| (OMU)GAAC*GAA | 1 |
| UGGCC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*G | 3 |
| AAU*CC | 2 |
| GAC* | 2 |
| CAU*UC | 1 |
| GAA*A | 1 |
| GGC* | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- C-loop (H) (3)
- Major groove minor groove platform with tHH (H) (3)
- C-loop (2)
- Major groove minor groove platform with tHH (1)
- (1)
- Basepair signature
- cWW-L-cWW-L-L
- Heat map statistics
- Min 0.08 | Avg 0.42 | Max 0.82
Coloring options: