Motif IL_06808.1 Version IL_06808.1 of this group appears in releases 0.6 to 1.18

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-8	2-7	3-6	4-5
1	IL_2QBZ_003	2QBZ	0	1	X	M-Box RNA, ykoK riboswitch aptamer	U	28	G	29	A	30	G	31	*	U	153	A	154	A	156	G	157	cWW	tSH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAG*UAAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*AAA	1

Release history

Release	0.6	0.7	0.8	0.9	0.10	0.11	0.12	1.0	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13	1.14	1.15	1.17	1.18
Date	2012-04-02	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04	2013-04-08	2013-05-04	2013-06-01	2013-07-01	2013-08-03	2013-08-31	2013-09-28	2013-11-05	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29	2014-04-27	2014-06-20	2014-09-04	2014-10-07
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_06808.1	Only in the parent motif
IL_03728.1 Compare	IL_2QBZ_003		IL_2ZJR_057, IL_2XZM_004, IL_3O30_090, IL_3PYO_077, IL_1SAQ_002, IL_2AW7_065, IL_2QBG_088, IL_2ZJR_082, IL_1FJG_059, IL_3D0U_002, IL_1SA9_001, IL_1S72_098, IL_2XZM_089, IL_3DIR_002, IL_3O30_087, IL_2QBG_017

Children motifs

This motif has no children motifs.

Annotations: (1)
Basepair signature: cWW-tSH-tHS-cWW
Heat map statistics: Min 0.00 | Avg 0.00 | Max 0.00

Help

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 0.1577 s